Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq50848 98.7 2e-15 >seq50848 Length=23004 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 189437 ACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCAT 189496 ||||| || ||| ||||||| ||| | |||| || ||||| |||||| |||||||| Sbjct 10385 ACTCACGACCCTTTATGGAATGCGGCTCAAAAACAAATGGTTGTAGAAGGCAAAATGCAC 10444 Query 189497 AGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGAC 189556 | ||||| ||||||||||||| ||||| ||| | |||||||| | || || || || Sbjct 10445 GGATTTTTGAGAATGTATTGGGCGAAGAAAATATTAGAATGGACGAAAAGTCCAGAGGAA 10504 Query 189557 GC-TTTGAGTTATAGTATCTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCTAA 189615 || || ||| | | | || ||||| ||| | || ||| | || || | ||||| || Sbjct 10505 GCGTTAGAGATCTCG-ATATATTTAAACGATAAATACAGTATGGATGGTAGAGATCCCAA 10563 Query 189616 CGGATACGTAGGT 189628 || || || ||| Sbjct 10564 TGGCTATGTTGGT 10576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922269148775440