Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_002371.2 Length=41724 Score E Sequences producing significant alignments: (Bits) Value seq9614 150 5e-32 seq19165 138 3e-28 >seq9614 Length=652 Score = 150 bits (166), Expect = 5e-32 Identities = 118/141 (84%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 36468 CGCATAGGGATTGCAGCAGTAGACGAAATCGAATCTGACCATAAGCGGCATCGCTGGACT 36527 ||||| ||| | ||||||||||||||||||||| ||||||| || |||||||||||| Sbjct 632 CGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCAAACCATAACCGCCATCGCTGGACT 573 Query 36528 ACCGAAGAGTGCAAAGCGATTAAGGCGGAGTATCAGCAGAAGCTTAAAGACCTACGTGAC 36587 | |||||||||||| ||||| ||||| ||||| || ||||| || |||||||| || | Sbjct 572 ATCGAAGAGTGCAAGGCGATCAAGGCAGAGTACCAACAGAAACTCAAAGACCTGCGAAAT 513 Query 36588 AGCAGAAGCGAGGCAGCATGA 36608 |||||||| ||||| |||||| Sbjct 512 AGCAGAAGTGAGGCCGCATGA 492 Score = 93.3 bits (102), Expect = 1e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 36818 GAGGCCGCATGACACACACTGTCAAAACCATTCCAGACATGCTCATAGAGACATATGGAA 36877 ||||||||||||| | | || ||||||||||||||||||||| | || ||||| |||| Sbjct 503 GAGGCCGCATGACGTTCTCAGTAAAAACCATTCCAGACATGCTCGTTGAAACATACGGAA 444 Query 36878 ACCAGACAGAAGTAGCACG 36896 | ||||||||||||||||| Sbjct 443 ATCAGACAGAAGTAGCACG 425 >seq19165 Length=1007 Score = 138 bits (152), Expect = 3e-28 Identities = 97/111 (87%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 25278 TTTTGCTGCTTCCAGCTCAACTCGCAGCTTCCCAACCGTAAGCGCAATATCCTCGTCCTC 25337 |||||||| ||| |||||||| ||||| ||||| || || |||||||||||||||| ||| Sbjct 431 TTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTC 372 Query 25338 CTGGTCGCGGAGTTTGATGTATTGCTGTTTTTTATCCAGCTCATCCAGCAG 25388 |||||||||| |||||||||||||||| ||| | ||| | ||||||||||| Sbjct 371 CTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAG 321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133267863109752