Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq28572 116 5e-21 seq31858 113 7e-20 seq46443 105 1e-17 seq52934 102 1e-16 seq14379 98.7 1e-15 seq63578 93.3 6e-14 >seq28572 Length=14732 Score = 116 bits (128), Expect = 5e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| || | | ||||||||||||||||||||||| || ||||| || | Sbjct 2971 TTCCTCCTCTGAGACGGAGAACCAAATGTAAAGTAGATTCTTTTTGGATGTTATAGTCCG 3030 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||| ||||| | ||| || | |||||| || || ||||||| | |||||| ||||||| Sbjct 3031 AAAGTGTTCTACCATCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAG 3090 Query 146169 GAATTCCTTCTTTATCTTG 146187 | || ||||||||||| || Sbjct 3091 GGATGCCTTCTTTATCCTG 3109 Score = 111 bits (122), Expect = 2e-19 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | || | || ||||| | ||| |||||||| ||||||||||| || Sbjct 1833 CCGCCTCTCAATCGGAGGACTAAATGAAGAGTCGATTCTTTTTGAATATTATAATCCGAG 1892 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||||| || || | ||||||||| || ||||| | | |||||| || |||||| Sbjct 1893 AGAGTTCTGCCGTCTTCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCTGGAGGA 1952 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||| || |||||||| || || | || ||| Sbjct 1953 ATTCCCTCCTTATCTTGGATTTTGGCCTTGACATTTTCGATTGTGTCACTAGGCTCGACT 2012 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || |||||||||||||||||||| ||||| | ||| |||||||| Sbjct 2013 TCGAGGGTGATTGTTTTACCTGTTAAGGTTTTGACGAAAATTTGCAT 2059 Score = 109 bits (120), Expect = 8e-19 Identities = 160/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | || | |||||||||||||| ||||| || ||||| ||||| ||| Sbjct 3201 CCACCTCTCAATCGAAGAACCAAATGTAAAGTCGATTCCTTTTGGATATTGTAATCGGAA 3260 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| || || || | ||| |||||||| || |||| | ||| ||||| |||||| Sbjct 3261 AGCGTTCGGCCGTCTTCGAGTTGCTTTCCAGCGAAGATCAGACGTTGTTGATCAGGAGGA 3320 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACT---TTCT 146227 || ||||| |||||||| ||||| ||| ||| Sbjct 3321 ATACCTTCCTTATCTTGAATTTTCGCCTTGACGTTTTCGATCGTATC---ACTCGGTTCA 3377 Query 146228 ACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 ||||| || ||||| |||||||| || || ||||| | ||| || |||||||| Sbjct 3378 ACTTCGAGGGTGATGGTTTTACCAGTCAACGTTTTTACGAAGATCTGCATTTT 3430 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| || |||||||| | || || ||||| ||||| ||||| ||| Sbjct 1605 CCACCACGAAGTCGCAACACCAAATGCAGCGTCGACTCTTTCTGGATATTGTAATCCGAA 1664 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| || | || ||||| || ||||| || | ||||||||| ||||| Sbjct 1665 AGAGTTCTACCATCTTCAAGCTGCTTTCCGGCGAAAATTAAACGTTGCTGATCGGGAGGG 1724 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| ||||| Sbjct 1725 ATTCCTTCTTTGTCTTG 1741 Score = 104 bits (114), Expect = 3e-17 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 || ||||| | || | || | ||||||||| ||||| ||| || ||||| ||||| || Sbjct 2061 CCTCCTCTCAATCGAAGCACGAGATGTAAAGTTGATTCCTTTTGA-ATATTGTAATCGGA 2119 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || |||| || ||| || | |||||| || |||||||| || | ||| ||||| || || Sbjct 2120 GAGGGTTCGGCCATCTTCGAGTTGTTTGCCGGCAAAAATTAAACGTTGTTGATCTGGGGG 2179 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTAT--CTGAACTTTCT 146227 ||||||||| |||||||| || | ||| | ||| Sbjct 2180 AATTCCTTCCTTATCTTGGATTTTAGCCTTGACGTTTTCGATGGTGTCACTGGGC--TCT 2237 Query 146228 ACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| || ||||| |||||||| |||| ||||||| ||| |||||||| Sbjct 2238 ACTTCGAGAGTGATGGTTTTACCCGTTAGGGTTTTAACGAAGATTTGCAT 2287 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | || | || ||||| || || |||||||| || ||||| || ||| Sbjct 2289 CCACCTCTCAATCGGAGAACTAAATGCAATGTCGATTCTTTTTGGATGTTATAGTCCGAA 2348 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| || | |||||| |||||||| || | | ||||||||| || ||| Sbjct 2349 AGAGTTCTTCCATCTTCGAGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCAGGGGGA 2408 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| || |||||||| Sbjct 2409 ATTCCCTCCTTATCTTG 2425 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||||||||| || |||||||| || || ||||| |||||||||| || || || Sbjct 2535 ACCAAATGTAATGTCGATTCTTTTTGGATGTTGTAATCGGAAAGAGTTCGGCCGTCTTCG 2594 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||| || || ||||| || | ||| ||||| || |||||||| || ||||| || Sbjct 2595 AGTTGTTTACCGGCGAAAATTAAACGTTGTTGATCAGGGGGAATTCCCTCCTTATCCTG 2653 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | || | || ||||| | || |||||||| || ||||| || || Sbjct 2745 CCACCTCTCAATCGAAGGACTAAATGAAGGGTCGATTCTTTTTGGATGTTATAGTCAGAG 2804 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| || | |||||| ||||| || || | | ||| ||||| || ||| Sbjct 2805 AGAGTTCTTCCATCTTCGAGTTGTTTGCCAGCGAAGATGAGACGTTGTTGATCGGGTGGA 2864 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| ||||||||||| Sbjct 2865 ATTCCCTCTTTATCTTG 2881 >seq31858 Length=13054 Score = 113 bits (124), Expect = 7e-20 Identities = 150/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 10397 AAAATTAATAAAAACTGATTTAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGC 10456 |||||||||||| || ||| | | | |||||||| | ||||| | ||| ||| Sbjct 6480 AAAATTAATAAACACCGATCTTGCTCTGGAAATTCCGTCAAACTGTTACGGGAGAATAGT 6539 Query 10457 TCCCAGATCTGA-TTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGACG 10515 |||| || ||| ||||| ||||| | || ||||| ||||||| || || || || | Sbjct 6540 ACCCAAAT-TGAGCTTAGCATTAAATCACTTCATTGACATTGGAGGAGGTGTCATCGATG 6598 Query 10516 AAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTATAA 10575 ||||||| |||||||||||||| | || ||||||||||||| || | |||| | || Sbjct 6599 AAGATTACAGAGGAAATGTGGGCATTATTATATTTAATCATTCCGATCATCATTTCAAAA 6658 Query 10576 TAAATAGAGGAGATAGAATATCTCAA 10601 | || |||||||| ||| ||||| Sbjct 6659 TCAAACGAGGAGATCAAATTGCTCAA 6684 >seq46443 Length=17015 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| ||||| ||||| | |||||||||||| || |||||||| ||| Sbjct 12695 CCACCTCTCAATCTCAATACTAAATGCAGAGTAGATTCTTTTTGGATGTTATAATCGGAA 12754 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || | |||||| |||||||||||||| | ||| || || |||||| Sbjct 12755 AGGGTACGTCCATCTTCGAGTTGTTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGA 12814 Query 146171 ATTCCT 146176 || ||| Sbjct 12815 ATGCCT 12820 >seq52934 Length=6696 Score = 102 bits (112), Expect = 1e-16 Identities = 127/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| ||||| || |||||||| | ||| || ||||| ||||| || || ||||| | | Sbjct 3974 ATATTGTAATCGGATAGAGTTCTACCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGT 4033 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 ||||| || ||||| || |||||||||||||| |||| Sbjct 4034 TGCTGGTCGGGAGGGATACCTTCTTTATCTTGAATTTTAGCTTTTACATTTTCAATAGTA 4093 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 || ||| ||| ||||| || ||||| |||||||| |||| ||||| | ||| || ||| Sbjct 4094 TCCGAAGGTTCGACTTCGAGAGTGATCGTTTTACCCGTTAGGGTTTTCACGAAGATCTGC 4153 Query 146276 AT 146277 || Sbjct 4154 AT 4155 >seq14379 Length=4834 Score = 98.7 bits (108), Expect = 1e-15 Identities = 94/118 (80%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 95572 AATAATAATCACGAAATACATAAACAA-TATACTGGATATTATGTATCAAAAGATCTAAT 95630 |||||||| | |||||| | |||||| ||| | | || |||| | ||||| || || Sbjct 4290 AATAATAAATATGAAATAAACAAACAAGTATCAGGTACAT-ATGTCTGCAAAGAACTCAT 4348 Query 95631 ATTAGATATTGCATCTTGGATAGCTCCTGAATTTTATTTAAAATGTAATGATATAATT 95688 ||||| |||||||||||||| |||||||||| ||||| |||||||||||||| ||| Sbjct 4349 CTTAGACATTGCATCTTGGATTTCTCCTGAATTCTATTTGAAATGTAATGATATTATT 4406 >seq63578 Length=26733 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | | ||| | |||||| || | ||| |||||||| || |||||||| Sbjct 11592 TTCCACCACGTAATCTGAGTACCAAGTGAAGAGTGGATTCTTTCTGAATGTTATAATCAC 11651 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||| | || ||| || || ||||| || ||||| ||||||| |||||| || || | Sbjct 11652 TCAGAGTACGGCCATCTTCCAACTGTTTACCGGCAAAGATCAATCGTTGCTGGTCTGGTG 11711 Query 146169 GAATTCCTTCTTTATCTTG 146187 | || ||||||||||| || Sbjct 11712 GTATGCCTTCTTTATCCTG 11730 Score = 89.7 bits (98), Expect = 8e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||||| ||| | ||| || ||||| | ||| |||||||| ||||||||||| Sbjct 12276 TTCCACCTCGAAGACGTAAAACTAAATGAAGAGTGGATTCTTTTTGGATATTATAATCGC 12335 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || | | || || |||||||| || || ||||| ||||| ||||| || || | Sbjct 12336 TCAAGGTACGACCGTCTTCCAATTGTTTACCGGCGAAAATTAATCTCTGCTGGTCGGGTG 12395 Query 146169 GAATTCCTTCTTTATCTTG 146187 | || |||||||| ||||| Sbjct 12396 GGATGCCTTCTTTGTCTTG 12414 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| || | ||| | || |||||||| | || || || || ||||||||||| Sbjct 11365 TCCGCCACGAAGACGCAAAACCAAATGAAGGGTGGACTCCTTCTGAATATTATAATCGCT 11424 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | || | || ||| || ||||| |||||||| ||||||||||| ||||| || || || Sbjct 11425 TAACGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCTCTGCTGGTCAGGCGG 11484 Query 146170 AATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 11485 GATACCTTCTTTATCTTG 11502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742779286085120