Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq7792 104 2e-17 seq13914 102 8e-17 >seq7792 Length=27931 Score = 104 bits (114), Expect = 2e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 16508 TAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAA 16567 || || ||||| | |||||| |||||||||||||||| |||||| || | |||||||| Sbjct 19495 TATGTGTCTATCAATAAACTGTACATTTCTGAATGAACATTCTCTATGGTGATCTGAAAT 19554 Query 16568 CCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTT 16627 || || ||| |||||||||||| ||||| ||||| | || | || |||| ||| Sbjct 19555 CCGTAGAAGAATCTAGCTTCGGGGATTTGAACTTCTTGAAAGAAGCGCTCGACTAAATTT 19614 Query 16628 TCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttt 16687 || || || || || || || || ||||| ||||| | ||| ||| || || || Sbjct 19615 TCATTCACGATACCGTCAGATGCGGCGAAAAATGCAAGAACGTGCGAAATGAACTTCTTC 19674 Query 16688 tC 16689 || Sbjct 19675 TC 19676 Score = 89.7 bits (98), Expect = 5e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 15930 ACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTT 15989 |||||||| |||| | |||||| | |||||||||||| |||||||| ||||| || | Sbjct 18703 ACATAACTCCACTTTTCTTATATTCTCCAACTCTCTTTTCGAAGAAATTCGTTTTACCAT 18762 Query 15990 CTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023 || || ||||||||||||||||| ||||| || Sbjct 18763 TCAAGGATATATTTTCCATAAAATCGAAAGGGTT 18796 >seq13914 Length=11729 Score = 102 bits (112), Expect = 8e-17 Identities = 158/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 16257 CTTCGTCCCTACTTATTAACTCGTT--TGAAAATGTAAGACCTGGCATTAGTCCTCGTTT 16314 ||||||| || |||||| || || ||||| || || || |||||||| || | ||| Sbjct 7886 CTTCGTCTCTTGATATTAATTCATTGCTGAAA--GTCAGTCCAGGCATTAGGCCCCTTTT 7943 Query 16315 TTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAA 16374 ||||| ||||||||| || ||||| ||||||||||| |||||||| || || ||||| Sbjct 7944 TTTAAGCCAAAATATCGCAGCAAAACTTCCAGAAAAGAAAATACCTTCGACAGCAGCAAA 8003 Query 16375 TGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaatt 16434 || | | || || || | || ||||| | |||||| || ||||| | Sbjct 8004 AGCTATGATTCTTTCTCCAAAAGTCGCGTTTTTGTCATTTATCCACTTCAACGCCCAGTC 8063 Query 16435 tgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478 |||||| |||||||| |||| | || || ||||| |||| Sbjct 8064 AGCTTTTCTCTTAACACACGGCATGGTTTCAATGGCATTGAATA 8107 Score = 100 bits (110), Expect = 3e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 16498 ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGC 16557 |||| ||| ||||| || || | || || |||||||||||||| | |||||| |||| Sbjct 8198 ATCTTTAATGTAAGTGTCAATCAACAAGCTGTACATTTCTGAATGTACATTCTCAATTGT 8257 Query 16558 TATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTC 16617 || ||||| || ||||| |||| ||||| | ||||||||||| | |||| | || Sbjct 8258 GATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATTTGTACTTCTTGGAAAAAACGCTC 8317 Query 16618 TGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGC 16662 |||| ||||| ||||| || ||||| || || ||||| || Sbjct 8318 GACTAAATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGC 8362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462047256379600