Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq54470 196 4e-45 >seq54470 Length=54847 Score = 196 bits (216), Expect = 4e-45 Identities = 246/338 (73%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277 || ||| | ||||| || || ||||| ||||||||||| || |||||||| || || Sbjct 48713 GGCGATCTCGGTCCAGTTTACGGATTCCAATGGAGACACTTCGGAGCTGAGTACAAAGAT 48654 Query 20278 ATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATT 20337 ||| || | |||| | |||| | |||||| | |||||||| ||| || ||| Sbjct 48653 ATGCACGCCGATTACTCCAACAAAGGCATCGATCAACTGCAAAATGTCATTGATACCATT 48594 Query 20338 AAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCT 20397 |||| ||||| |||| |||||||| ||||||||||| ||||| | |||| | || Sbjct 48593 AAAAATAACCCCGACGATAGAAGAATAATTTTATGCGCTTGGAATCCGTTAGATTTACCC 48534 Query 20398 TTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTG 20457 ||||| | ||||| ||||| || || ||||||| || |||| ||||| Sbjct 48533 AAGATGGCCCTACCTCCTTGTCACTGTTTAGTGCAGTTTTACGCTGTTAATGGCGAATTA 48474 Query 20458 TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCA 20517 |||||||||||||||||||| || || |||||||| | || || ||||| ||||| || Sbjct 48473 TCGTGTCAAATGTATCAACGTTCTGCCGATATGGGTTTAGGAGTACCTTTTAATATCGCC 48414 Query 20518 AGTTATGCGCTGCTTACGTATATGATTGCACATGTTAC 20555 ||||| | || || || || ||||| ||||||||||| Sbjct 48413 AGTTACTCCCTACTCACTTACATGATCGCACATGTTAC 48376 Score = 87.8 bits (96), Expect = 1e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 20044 TTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGG 20103 ||||| || | || |||||||| |||||||||||||| || ||||||||| || ||||| Sbjct 48945 TTTCCGCTACTGACCACGAAACGAGTATTTTGGAAAGGTGTCGTTGAAGAGCTACTATGG 48886 Query 20104 TTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGA 20161 || || | |||||| || || | | || | || ||||||||||| ||||||| Sbjct 48885 TTCATCAGAGGATCTACGAACGCGAAAGAATTATCCGACAAAGGAGTTAAAATTTGGA 48828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398792917688770