Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq7792 145 7e-30 seq13914 118 1e-21 >seq7792 Length=27931 Score = 145 bits (160), Expect = 7e-30 Identities = 155/203 (76%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 14245 TTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 14302 |||||| ||||| || ||||| ||||| | ||||| ||||| | ||||||||||||| Sbjct 19194 TTCGTTACTGAAA--GTCAATCCAGGCATTAGGCCTCGCTTTTTAAGCCAAAATATTGCA 19251 Query 14303 GCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCA 14362 || || ||| |||||||| || || || || |||||||||||||| | | ||||||| Sbjct 19252 GCAAAACTTCCTGAAAAGAAGATGCCTTCGACGGCAGCAAACGCTATGATCCTTTCTCCA 19311 Query 14363 AACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAA 14422 || | || ||||| | | ||||||||| ||||| || | ||| || |||| | || Sbjct 19312 AAAGTAGCATTTTTATCAGCTATCCATTTCAACGCCCAGTCTGCTTTCTTCTTAACACAA 19371 Query 14423 TCCATTGTTTCAATAGCATTAAA 14445 |||||||||||||||||| || Sbjct 19372 GGCATTGTTTCAATAGCATTGAA 19394 Score = 86.0 bits (94), Expect = 6e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 13901 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13960 ||||| || |||| | |||||| | |||||| ||||| ||||| || |||||||| | | Sbjct 18705 ATAACTCCACTTTTCTTATATTCTCCAACTCTCTTTTCGAAGAAATTCGTTTTACCATTC 18764 Query 13961 AGTGATATATTTTCCATAAAATCAAATGGATT 13992 | |||||||||||||||||||| || || || Sbjct 18765 AAGGATATATTTTCCATAAAATCGAAAGGGTT 18796 >seq13914 Length=11729 Score = 118 bits (130), Expect = 1e-21 Identities = 163/227 (72%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||| || ||||| | ||||| |||||||| || |||| || || || | || || Sbjct 8204 AATGTAAGTGTCAATCAACAAGCTGTACATTTCTGAATGTACATTCTCAATTGTGATTTG 8263 Query 14533 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAA 14592 ||| || |||||| |||| ||||| | |||||| ||| | |||| | ||| | || Sbjct 8264 AAATCCGTAAAAAAATCTGGCTTCAGGAATTTGTACTTCTTGGAAAAAACGCTCGACTAA 8323 Query 14593 ATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA 14652 |||||||||||| ||||||||| || || |||||||| || | || ||| || | Sbjct 8324 ATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGGGAAATGAATTT 8383 Query 14653 TTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAA 14699 | |||||| | ||||||| |||||| |||||| |||||| Sbjct 8384 CTTCTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATCC-TAGAAA 8429 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/145 (75%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 13850 AAAAACTAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATA--ACGC 13907 ||||||||||||||| |||| || || |||| || | ||| |||| | || | Sbjct 7349 AAAAACTAAAAATCAGCATCCAATTTGAATTCATTTTCACCC--GTTGGAAACATGACTC 7406 Query 13908 CCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATA 13967 | |||| | ||||| | |||||||| |||||||| || |||||||| | || |||| Sbjct 7407 CACTTTTCTTGTATTCGCCTACTCTTTTCTCAAAGAAATTCGTTTTACCGTTTAGAGATA 7466 Query 13968 TATTTTCCATAAAATCAAATGGATT 13992 |||||||||||||||| ||||| || Sbjct 7467 TATTTTCCATAAAATCGAATGGGTT 7491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481860927082480