Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq28572 123 2e-23
seq63578 100 2e-16
>seq28572
Length=14732
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
|||||| | || | || |||| || | || ||||||||||| ||||| ||||| |
Sbjct 2972 TCCTCCTCTGAGACGGAGAACCAAATGTAAAGTAGATTCTTTTTGGATGTTATAGTCCGA 3031
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| |||| ||| |||||| | |||||| || || | || || | ||| || ||| ||
Sbjct 3032 AAGTGTTCTACCATCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGG 3091
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| |||||| ||||| ||||| | |||||| | | ||| ||||| | ||||||
Sbjct 3092 GATGCCTTCTTTATCCTGAATTTTTGCCTTGACGTTTTCAATCGTGTCGCTAGGCTCGAC 3151
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||| | |||||| |||||||||| || |||||||| || || |||||
Sbjct 3152 TTCGAGAGTGATGGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 3199
Score = 107 bits (118), Expect = 1e-18
Identities = 143/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 18128 TGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCC 18187
||| ||||||||||| ||||| ||||| | | ||| | | |||||| | |||||| ||
Sbjct 2318 TGTCGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTTCCATCTTCGAGTTGTTTACC 2377
Query 18188 CGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTT 18247
||| ||||||| | ||| ||||| ||| | || |||||||| ||||| |||
Sbjct 2378 AGCAAAGATAAGACGTTGCTGATCAGGGGGAATTCCCTCCTTATCTTGAATTTTGGCCTT 2437
Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307
||| | | | | ||||||| |||||| || | ||||| |||| || || || ||
Sbjct 2438 GACATTTTCGATCGTGTCACTAGGCTCGACCTCGAGTGTGATAGTTTTACCAGTTAAGGT 2497
Query 18308 TTTTACAAAAATTTGCATT 18326
|| || ||||||||||||
Sbjct 2498 CTTGACGAAAATTTGCATT 2516
Score = 105 bits (116), Expect = 5e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
|||||| || || | || |||| || | ||| ||||||||||| |||||||| ||||
Sbjct 2516 TCCTCCTCGGAGACGGAGAACCAAATGTAATGTCGATTCTTTTTGGATGTTGTAATCGGA 2575
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| ||| | ||||| | |||||| || || | || | | ||||||||| |||
Sbjct 2576 AAGAGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGTTGATCAGGGGG 2635
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| || |||||||| ||||| |||||| | | | | ||||||| ||||||
Sbjct 2636 AATTCCCTCCTTATCCTGAATTTTAGCCTTGACATTTTCGATGGTGTCACTGGGCTCTAC 2695
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||| | |||||| |||| || || || ||||| || ||||| |||||
Sbjct 2696 TTCGAGAGTGATGGTTTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 2743
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188
|||||||| |||||||| ||||| |||| | ||| | |||||| | |||||||||
Sbjct 2091 GTTGATTCCTTTTGAATATTGTAATCGGAGAGGGTTCGGCCATCTTCGAGTTGTTTGCCG 2150
Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248
||| | || | | ||||||||| ||| | ||||||||||| |||| ||||
Sbjct 2151 GCAAAAATTAAACGTTGTTGATCTGGGGGAATTCCTTCCTTATCTTGGATTTTAGCCTTG 2210
Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308
|| | | | | ||||||| |||||| ||| | |||||| |||| || || | |||
Sbjct 2211 ACGTTTTCGATGGTGTCACTGGGCTCTACTTCGAGAGTGATGGTTTTACCCGTTAGGGTT 2270
Query 18309 TTTACAAAAATTTGCAT 18325
|| || || ||||||||
Sbjct 2271 TTAACGAAGATTTGCAT 2287
Score = 98.7 bits (108), Expect = 8e-16
Identities = 152/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 18110 TCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA 18169
|| ||| || | ||||| || ||||||||||| ||||| ||||| | | ||| | |
Sbjct 2756 TCGAAGGACTAAATGAAGGGTCGATTCTTTTTGGATGTTATAGTCAGAGAGAGTTCTTCC 2815
Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229
|||||| | ||||||||| || |||| || | ||||||||| || | || || ||
Sbjct 2816 ATCTTCGAGTTGTTTGCCAGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCCTCTTT 2875
Query 18230 ATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGAT 18289
||| |||| |||||| | | ||| |||||| | ||||| ||| | || ||
Sbjct 2876 ATCTTGTATTTTGGCCTTGACGTTTTCAATAGTGTCGCTAGGCTCAACTTCGAGTGTAAT 2935
Query 18290 GCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|||| || ||||| || || || || |||||||||
Sbjct 2936 CGTTTTACCAGTCAAGGTCTTGACGAAGATTTGCATT 2972
Score = 95.1 bits (104), Expect = 9e-15
Identities = 153/220 (70%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 18110 TCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA 18169
|| ||| |||| || | || ||||| ||||| || ||||| |||| | ||| |
Sbjct 3212 TCGAAGAACCAAATGTAAAGTCGATTCCTTTTGGATATTGTAATCGGAAAGCGTTCGGCC 3271
Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229
||||| | ||| || || || |||| || | ||||||||| || | ||||||||
Sbjct 3272 GTCTTCGAGTTGCTTTCCAGCGAAGATCAGACGTTGTTGATCAGGAGGAATACCTTCCTT 3331
Query 18230 ATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGAT 18289
||| ||||| |||||| | | | | || |||| || || ||| | ||||||
Sbjct 3332 ATCTTGAATTTTCGCCTTGACGTTTTCGATCGTATCACTCGGTTCAACTTCGAGGGTGAT 3391
Query 18290 GCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329
| |||| || ||||| |||||||| || || |||||||||
Sbjct 3392 GGTTTTACCAGTCAACGTTTTTACGAAGATCTGCATTTTT 3431
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
||||| || |||||||||||||| || || || | | ||| | | ||||| | ||||
Sbjct 1857 TGAAGAGTCGATTCTTTTTGAATATTATAATCCGAGAGAGTTCTGCCGTCTTCGAGTTGT 1916
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
|| || || | || || | ||| || || || | || |||||||| ||||
Sbjct 1917 TTTCCGGCGAAAATGAGACGTTGCTGGTCTGGAGGAATTCCCTCCTTATCTTGGATTTTG 1976
Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302
|||||| | | | | ||||||| |||||| ||| | |||||| |||| || ||
Sbjct 1977 GCCTTGACATTTTCGATTGTGTCACTAGGCTCGACTTCGAGGGTGATTGTTTTACCTGTT 2036
Query 18303 AATGTTTTTACAAAAATTTGCAT 18325
|| ||||| || |||||||||||
Sbjct 2037 AAGGTTTTGACGAAAATTTGCAT 2059
>seq63578
Length=26733
Score = 100 bits (110), Expect = 2e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || |||| ||| ||||||| |||||| || |||||||| |||||||| || ||
Sbjct 11593 TCCACCACGTAATCTGAGTACCAAGTGAAGAGTGGATTCTTTCTGAATGTTATAATCACT 11652
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
|| || | ||||||||| ||||| || ||| |||| | || ||| || || ||
Sbjct 11653 CAGAGTACGGCCATCTTCCAACTGTTTACCGGCAAAGATCAATCGTTGCTGGTCTGGTGG 11712
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGG 18276
| |||||| ||||| ||||| | |||| ||| | | ||| || || || ||
Sbjct 11713 TATGCCTTCTTTATCCTGAATTT-TAGCTTTGACATTTTCAATGGTATCGGACGGTTCCA 11771
Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | ||| ||| |||| || || | ||||| || |||||||||||
Sbjct 11772 CCTCCAAGGTTATGGTTTTTCCAGTGAGCGTTTTAACGAAAATTTGCAT 11820
Score = 87.8 bits (96), Expect = 1e-12
Identities = 153/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||||| || |||||||||||||| ||||||||| || ||| | ||||
Sbjct 12521 AGGACCAAATGAAGCGTCGATTCTTTTTGAATATTGTAGTCGCTCAATGTGCGGCCATCT 12580
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
||||||||||| || ||| | || | | ||| || || || | ||||| |||||
Sbjct 12581 TCCAATTGTTTACCGGCAAAAATTAACCGTTGCTGGTCAGGTGGGATTCCTTCTTTATCT 12640
Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
||| | | || ||||| | | | | || || || || ||| | || ||| |
Sbjct 12641 TGAATCT-TGGCTTTGACGTTTTCGATCGTATCGGATGGTTCAACTTCCAAAGTAATGGT 12699
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAA 18332
||| ||||| | |||||||| || |||||||| || |||
Sbjct 12700 TTTTCCGGTAAGAGTTTTTACGAAGATTTGCATCTTGAAA 12739
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
|| || || || ||||| ||||||||||||||| || || || |||||| ||||||
Sbjct 12074 TGCAGCGTAGACTCTTTCTGAATGTTGTAGTCGCTCAAAGTACGACCATCTTCTAATTGT 12133
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
|| || || | || | |||||| || || || | ||||| ||||| |||| |
Sbjct 12134 TTACCGGCGAAAATTAATCTTTGCTGGTCGGGTGGGATACCTTCTTTATCTTGGATTT-T 12192
Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301
||| || || | | | | |||||| || ||| ||| | ||||| |||| || ||
Sbjct 12193 TGCTTTTACATTTTCGATTGTGTCAGATGGTTCGACTTCTAACGTGATAGTTTTTCCAGT 12252
Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326
| ||||| || ||||||||||||
Sbjct 12253 GAGCGTTTTAACGAAAATTTGCATT 12277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 378972355023570
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