Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq28572 123 2e-23 seq63578 100 2e-16 >seq28572 Length=14732 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | || | || |||| || | || ||||||||||| ||||| ||||| | Sbjct 2972 TCCTCCTCTGAGACGGAGAACCAAATGTAAAGTAGATTCTTTTTGGATGTTATAGTCCGA 3031 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | |||| ||| |||||| | |||||| || || | || || | ||| || ||| || Sbjct 3032 AAGTGTTCTACCATCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGG 3091 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||| ||||| ||||| | |||||| | | ||| ||||| | |||||| Sbjct 3092 GATGCCTTCTTTATCCTGAATTTTTGCCTTGACGTTTTCAATCGTGTCGCTAGGCTCGAC 3151 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| |||||||||| || |||||||| || || ||||| Sbjct 3152 TTCGAGAGTGATGGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 3199 Score = 107 bits (118), Expect = 1e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 18128 TGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCC 18187 ||| ||||||||||| ||||| ||||| | | ||| | | |||||| | |||||| || Sbjct 2318 TGTCGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTTCCATCTTCGAGTTGTTTACC 2377 Query 18188 CGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTT 18247 ||| ||||||| | ||| ||||| ||| | || |||||||| ||||| ||| Sbjct 2378 AGCAAAGATAAGACGTTGCTGATCAGGGGGAATTCCCTCCTTATCTTGAATTTTGGCCTT 2437 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 ||| | | | | ||||||| |||||| || | ||||| |||| || || || || Sbjct 2438 GACATTTTCGATCGTGTCACTAGGCTCGACCTCGAGTGTGATAGTTTTACCAGTTAAGGT 2497 Query 18308 TTTTACAAAAATTTGCATT 18326 || || |||||||||||| Sbjct 2498 CTTGACGAAAATTTGCATT 2516 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | || |||| || | ||| ||||||||||| |||||||| |||| Sbjct 2516 TCCTCCTCGGAGACGGAGAACCAAATGTAATGTCGATTCTTTTTGGATGTTGTAATCGGA 2575 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | ||||| | |||||| || || | || | | ||||||||| ||| Sbjct 2576 AAGAGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGTTGATCAGGGGG 2635 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || |||||||| ||||| |||||| | | | | ||||||| |||||| Sbjct 2636 AATTCCCTCCTTATCCTGAATTTTAGCCTTGACATTTTCGATGGTGTCACTGGGCTCTAC 2695 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| |||| || || || ||||| || ||||| ||||| Sbjct 2696 TTCGAGAGTGATGGTTTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 2743 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 |||||||| |||||||| ||||| |||| | ||| | |||||| | ||||||||| Sbjct 2091 GTTGATTCCTTTTGAATATTGTAATCGGAGAGGGTTCGGCCATCTTCGAGTTGTTTGCCG 2150 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| | || | | ||||||||| ||| | ||||||||||| |||| |||| Sbjct 2151 GCAAAAATTAAACGTTGTTGATCTGGGGGAATTCCTTCCTTATCTTGGATTTTAGCCTTG 2210 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | | | | ||||||| |||||| ||| | |||||| |||| || || | ||| Sbjct 2211 ACGTTTTCGATGGTGTCACTGGGCTCTACTTCGAGAGTGATGGTTTTACCCGTTAGGGTT 2270 Query 18309 TTTACAAAAATTTGCAT 18325 || || || |||||||| Sbjct 2271 TTAACGAAGATTTGCAT 2287 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 18110 TCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA 18169 || ||| || | ||||| || ||||||||||| ||||| ||||| | | ||| | | Sbjct 2756 TCGAAGGACTAAATGAAGGGTCGATTCTTTTTGGATGTTATAGTCAGAGAGAGTTCTTCC 2815 Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229 |||||| | ||||||||| || |||| || | ||||||||| || | || || || Sbjct 2816 ATCTTCGAGTTGTTTGCCAGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCCTCTTT 2875 Query 18230 ATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGAT 18289 ||| |||| |||||| | | ||| |||||| | ||||| ||| | || || Sbjct 2876 ATCTTGTATTTTGGCCTTGACGTTTTCAATAGTGTCGCTAGGCTCAACTTCGAGTGTAAT 2935 Query 18290 GCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| || ||||| || || || || ||||||||| Sbjct 2936 CGTTTTACCAGTCAAGGTCTTGACGAAGATTTGCATT 2972 Score = 95.1 bits (104), Expect = 9e-15 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 18110 TCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA 18169 || ||| |||| || | || ||||| ||||| || ||||| |||| | ||| | Sbjct 3212 TCGAAGAACCAAATGTAAAGTCGATTCCTTTTGGATATTGTAATCGGAAAGCGTTCGGCC 3271 Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229 ||||| | ||| || || || |||| || | ||||||||| || | |||||||| Sbjct 3272 GTCTTCGAGTTGCTTTCCAGCGAAGATCAGACGTTGTTGATCAGGAGGAATACCTTCCTT 3331 Query 18230 ATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGAT 18289 ||| ||||| |||||| | | | | || |||| || || ||| | |||||| Sbjct 3332 ATCTTGAATTTTCGCCTTGACGTTTTCGATCGTATCACTCGGTTCAACTTCGAGGGTGAT 3391 Query 18290 GCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 | |||| || ||||| |||||||| || || ||||||||| Sbjct 3392 GGTTTTACCAGTCAACGTTTTTACGAAGATCTGCATTTTT 3431 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || |||||||||||||| || || || | | ||| | | ||||| | |||| Sbjct 1857 TGAAGAGTCGATTCTTTTTGAATATTATAATCCGAGAGAGTTCTGCCGTCTTCGAGTTGT 1916 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || || | || || | ||| || || || | || |||||||| |||| Sbjct 1917 TTTCCGGCGAAAATGAGACGTTGCTGGTCTGGAGGAATTCCCTCCTTATCTTGGATTTTG 1976 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | | | | ||||||| |||||| ||| | |||||| |||| || || Sbjct 1977 GCCTTGACATTTTCGATTGTGTCACTAGGCTCGACTTCGAGGGTGATTGTTTTACCTGTT 2036 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 || ||||| || ||||||||||| Sbjct 2037 AAGGTTTTGACGAAAATTTGCAT 2059 >seq63578 Length=26733 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || |||| ||| ||||||| |||||| || |||||||| |||||||| || || Sbjct 11593 TCCACCACGTAATCTGAGTACCAAGTGAAGAGTGGATTCTTTCTGAATGTTATAATCACT 11652 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | ||||||||| ||||| || ||| |||| | || ||| || || || Sbjct 11653 CAGAGTACGGCCATCTTCCAACTGTTTACCGGCAAAGATCAATCGTTGCTGGTCTGGTGG 11712 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | |||||| ||||| ||||| | |||| ||| | | ||| || || || || Sbjct 11713 TATGCCTTCTTTATCCTGAATTT-TAGCTTTGACATTTTCAATGGTATCGGACGGTTCCA 11771 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||| ||| |||| || || | ||||| || ||||||||||| Sbjct 11772 CCTCCAAGGTTATGGTTTTTCCAGTGAGCGTTTTAACGAAAATTTGCAT 11820 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||||| || |||||||||||||| ||||||||| || ||| | |||| Sbjct 12521 AGGACCAAATGAAGCGTCGATTCTTTTTGAATATTGTAGTCGCTCAATGTGCGGCCATCT 12580 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||||||||| || ||| | || | | ||| || || || | ||||| ||||| Sbjct 12581 TCCAATTGTTTACCGGCAAAAATTAACCGTTGCTGGTCAGGTGGGATTCCTTCTTTATCT 12640 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | | || ||||| | | | | || || || || ||| | || ||| | Sbjct 12641 TGAATCT-TGGCTTTGACGTTTTCGATCGTATCGGATGGTTCAACTTCCAAAGTAATGGT 12699 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAA 18332 ||| ||||| | |||||||| || |||||||| || ||| Sbjct 12700 TTTTCCGGTAAGAGTTTTTACGAAGATTTGCATCTTGAAA 12739 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || || ||||| ||||||||||||||| || || || |||||| |||||| Sbjct 12074 TGCAGCGTAGACTCTTTCTGAATGTTGTAGTCGCTCAAAGTACGACCATCTTCTAATTGT 12133 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || || | || | |||||| || || || | ||||| ||||| |||| | Sbjct 12134 TTACCGGCGAAAATTAATCTTTGCTGGTCGGGTGGGATACCTTCTTTATCTTGGATTT-T 12192 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || || | | | | |||||| || ||| ||| | ||||| |||| || || Sbjct 12193 TGCTTTTACATTTTCGATTGTGTCAGATGGTTCGACTTCTAACGTGATAGTTTTTCCAGT 12252 Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326 | ||||| || |||||||||||| Sbjct 12253 GAGCGTTTTAACGAAAATTTGCATT 12277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378972355023570