Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq28572 116 3e-21 seq63578 107 2e-18 seq52934 86.0 5e-12 >seq28572 Length=14732 Score = 116 bits (128), Expect = 3e-21 Identities = 168/236 (71%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || || ||||| ||||| ||||| |||||||| || |||| |||||| | ||| Sbjct 1831 ATGCAAATCTTCGTTAAGACCTTGACCGGTAAAACGATTACTCTCGAAGTCGAACCTAGC 1772 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | |||| || |||| || || | |||||||| | || || ||| Sbjct 1771 GACACCATCGAAAACGTCAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCCGATCAG 1712 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||||||||||| | || || || || || |||||| | ||| | ||||||| Sbjct 1711 CAACGTTTAATTTTCGCCGGAAAGCAGCTTGAAGATGGTAGAACTCTTTCGGATTACAAT 1652 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGTCAATCAAT 25067 || ||||||||| | ||||| ||||| ||||| ||| | || || || |||| ||| Sbjct 1651 ATCCAGAAAGAGTCGACGCTGCATTTGGTGTTGCGACTTCGTGGTGG-CAATTAAT 1597 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || |||||||||||||||||||| || || |||| ||||| | ||| Sbjct 3199 ATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACCATCACTCTCGAAGTCGAGCCTAGC 3140 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | |||| || |||| ||||||| | ||||||||| | || |||||| Sbjct 3139 GACACGATTGAAAACGTCAAGGCAAAAATTCAGGATAAAGAAGGCATCCCTCCGGACCAG 3080 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGAT 24987 |||||| | || | || || |||||||| |||||| Sbjct 3079 CAACGTCTGATTTTCGCCGGTAAACAACTCGAAGAT 3044 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || || || ||||||||||| || ||||| || ||| |||| ||||| | || Sbjct 2059 ATGCAAATTTTCGTCAAAACCTTAACAGGTAAAACAATCACCCTCGAAGTCGAGCCTAGT 2000 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | |||| ||| |||| ||||| | || || || | || |||||| Sbjct 1999 GACACAATCGAAAATGTCAAGGCCAAAATCCAAGATAAGGAGGGAATTCCTCCAGACCAG 1940 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||| | || | || || |||||||| ||||| || ||| | ||||| | Sbjct 1939 CAACGTCTCATTTTCGCCGGAAAACAACTCGAAGACGGCAGAACTCTCTCGGATTATAAT 1880 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || || ||||| | || ||||||||||| | |||||| | || ||| Sbjct 1879 ATTCAAAAAGAATCGACTCTTCATTTAGTCCTCCGATTGAGAGGCGGT 1832 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || ||||||||||| || ||||| || || |||| || || | || Sbjct 2743 ATGCAGATTTTCGTCAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTAGAGCCCAGT 2684 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | |||| ||| |||| |||||| | || || || | || ||| || Sbjct 2683 GACACCATCGAAAATGTCAAGGCTAAAATTCAGGATAAGGAGGGAATTCCCCCTGATCAA 2624 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||||||||||| | || || |||||||| ||||| | ||| | |||||||| | Sbjct 2623 CAACGTTTAATTTTCGCCGGTAAACAACTCGAAGACGGCCGAACTCTTTCCGATTACAAC 2564 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || || ||||| | || | ||||| || | || | || ||||| Sbjct 2563 ATCCAAAAAGAATCGACATTACATTTGGTTCTCCGTCTCCGAGGAGG 2517 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || || ||||||||| |||| || ||||| || || |||| || || | || Sbjct 2287 ATGCAAATCTTCGTTAAAACCCTAACGGGTAAAACCATCACTCTCGAAGTAGAGCCCAGT 2228 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | |||| || |||| ||||| | || ||||| | || || || Sbjct 2227 GACACCATCGAAAACGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCCCCAGATCAA 2168 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||||||||||| | ||| ||||||||||| |||||| | || | |||||||| Sbjct 2167 CAACGTTTAATTTTTGCCGGCAAACAACTCGAAGATGGCCGAACCCTCTCCGATTACAAT 2108 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || || || || | || | ||| | ||| | |||||| | |||||| Sbjct 2107 ATTCAAAAGGAATCAACTTTACATCTCGTGCTTCGATTGAGAGGAGGT 2060 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || || || || ||||| || || |||||||| || |||| || || | ||| Sbjct 2971 ATGCAAATCTTCGTCAAGACCTTGACTGGTAAAACGATTACACTCGAAGTTGAGCCTAGC 2912 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | | |||| || |||| ||||| | ||||| || | || || || Sbjct 2911 GACACTATTGAAAACGTCAAGGCCAAAATACAAGATAAAGAGGGAATTCCACCCGATCAA 2852 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||| | || | || ||||||||||| |||||| | ||| | || || | | Sbjct 2851 CAACGTCTCATCTTCGCTGGCAAACAACTCGAAGATGGAAGAACTCTCTCTGACTATAAC 2792 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || || ||||| | || ||||||||||| | |||||| | || ||| Sbjct 2791 ATCCAAAAAGAATCGACCCTTCATTTAGTCCTTCGATTGAGAGGTGGT 2744 >seq63578 Length=26733 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || || |||||||| | || || ||||| |||||| | || || ||| || | Sbjct 11820 ATGCAAATTTTCGTTAAAACGCTCACTGGAAAAACCATAACCTTGGAGGTGGAACCGTCC 11761 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | |||| ||| || | |||||| | ||||||||| |||| |||||| Sbjct 11760 GATACCATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGCATACCACCAGACCAG 11701 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||||| || || | ||| || ||||| |||||||| | ||| ||| ||||| | | Sbjct 11700 CAACGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGTACTCTGAGTGATTATAAC 11641 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || |||||||| |||| ||||| || || | |||| || || || Sbjct 11640 ATTCAGAAAGAATCCACTCTTCACTTGGTACTCAGATTACGTGGTGG 11594 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || || || ||||| ||||||||||| || || ||| | || |||||| || | Sbjct 11592 ATGCAAATTTTCGTGAAAACTTTAACCGGCAAGACTATTACCTTGGAAGTCGAACCGTCC 11533 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | || | || || | |||||| | |||||||| | ||| ||||||| Sbjct 11532 GATACCATCGAGAACGTGAAAGCTAAAATTCAAGATAAAGAAGGTATCCCGCCTGACCAG 11473 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || | || || | || || || ||| |||||||| | || | | |||||| | Sbjct 11472 CAGAGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACGTTAAGCGATTATAAT 11413 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACG 25046 || ||||| ||| |||| |||||||| || || || Sbjct 11412 ATTCAGAAGGAGTCCACCCTTCATTTGGTTTTGCG 11378 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || || || ||||| | ||||| ||||| || || | || || ||| | | Sbjct 12732 ATGCAAATCTTCGTAAAAACTCTTACCGGAAAAACCATTACTTTGGAAGTTGAACCATCC 12673 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | |||| || || | || ||| | |||||||| | || ||||||| Sbjct 12672 GATACGATCGAAAACGTCAAAGCCAAGATTCAAGATAAAGAAGGAATCCCACCTGACCAG 12613 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||||| ||||| | ||| || |||||| |||||||| | || ||| ||| |||| Sbjct 12612 CAACGGTTAATTTTTGCCGGTAAACAATTGGAAGATGGCCGCACATTGAGCGACTACAAT 12553 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || || ||||| | ||||||||||| || |||| | ||||| ||| Sbjct 12552 ATTCAAAAAGAATCGACGCTTCATTTGGTCCTACGTCTTCGCGGCGGT 12505 >seq52934 Length=6696 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || |||||| |||| || |||||||| || |||| |||||| | Sbjct 4155 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACGATCACTCTCGAAGTCGAACCTTCG 4096 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | | |||| ||| || | |||||| | |||||||| | || |||||| Sbjct 4095 GATACTATTGAAAATGTAAAAGCTAAAATTCAAGATAAAGAAGGTATCCCTCCCGACCAG 4036 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||||| || | || || || ||| |||||||| | ||| | |||||||| Sbjct 4035 CAACGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGTAGAACTCTATCCGATTACAAT 3976 Query 25012 ATACAGAAAG 25021 || || |||| Sbjct 3975 ATCCAAAAAG 3966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417894185741120