Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_003094.2
Length=130759
Score E
Sequences producing significant alignments: (Bits) Value
seq28572 116 3e-21
seq63578 107 2e-18
seq52934 86.0 5e-12
>seq28572
Length=14732
Score = 116 bits (128), Expect = 3e-21
Identities = 168/236 (71%), Gaps = 1/236 (0%)
Strand=Plus/Minus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
||||| || || ||||| ||||| ||||| |||||||| || |||| |||||| | |||
Sbjct 1831 ATGCAAATCTTCGTTAAGACCTTGACCGGTAAAACGATTACTCTCGAAGTCGAACCTAGC 1772
Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951
|||| | |||| || |||| || || | |||||||| | || || |||
Sbjct 1771 GACACCATCGAAAACGTCAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCCGATCAG 1712
Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011
||||||||||| | || || || || || |||||| | ||| | |||||||
Sbjct 1711 CAACGTTTAATTTTCGCCGGAAAGCAGCTTGAAGATGGTAGAACTCTTTCGGATTACAAT 1652
Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGTCAATCAAT 25067
|| ||||||||| | ||||| ||||| ||||| ||| | || || || |||| |||
Sbjct 1651 ATCCAGAAAGAGTCGACGCTGCATTTGGTGTTGCGACTTCGTGGTGG-CAATTAAT 1597
Score = 111 bits (122), Expect = 1e-19
Identities = 118/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
|||||||| || || |||||||||||||||||||| || || |||| ||||| | |||
Sbjct 3199 ATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACCATCACTCTCGAAGTCGAGCCTAGC 3140
Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951
|||| | |||| || |||| ||||||| | ||||||||| | || ||||||
Sbjct 3139 GACACGATTGAAAACGTCAAGGCAAAAATTCAGGATAAAGAAGGCATCCCTCCGGACCAG 3080
Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGAT 24987
|||||| | || | || || |||||||| ||||||
Sbjct 3079 CAACGTCTGATTTTCGCCGGTAAACAACTCGAAGAT 3044
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
||||| || || || ||||||||||| || ||||| || ||| |||| ||||| | ||
Sbjct 2059 ATGCAAATTTTCGTCAAAACCTTAACAGGTAAAACAATCACCCTCGAAGTCGAGCCTAGT 2000
Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951
|||| | |||| ||| |||| ||||| | || || || | || ||||||
Sbjct 1999 GACACAATCGAAAATGTCAAGGCCAAAATCCAAGATAAGGAGGGAATTCCTCCAGACCAG 1940
Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011
|||||| | || | || || |||||||| ||||| || ||| | ||||| |
Sbjct 1939 CAACGTCTCATTTTCGCCGGAAAACAACTCGAAGACGGCAGAACTCTCTCGGATTATAAT 1880
Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059
|| || ||||| | || ||||||||||| | |||||| | || |||
Sbjct 1879 ATTCAAAAAGAATCGACTCTTCATTTAGTCCTCCGATTGAGAGGCGGT 1832
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
|||||||| || || ||||||||||| || ||||| || || |||| || || | ||
Sbjct 2743 ATGCAGATTTTCGTCAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTAGAGCCCAGT 2684
Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951
|||| | |||| ||| |||| |||||| | || || || | || ||| ||
Sbjct 2683 GACACCATCGAAAATGTCAAGGCTAAAATTCAGGATAAGGAGGGAATTCCCCCTGATCAA 2624
Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011
||||||||||| | || || |||||||| ||||| | ||| | |||||||| |
Sbjct 2623 CAACGTTTAATTTTCGCCGGTAAACAACTCGAAGACGGCCGAACTCTTTCCGATTACAAC 2564
Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058
|| || ||||| | || | ||||| || | || | || |||||
Sbjct 2563 ATCCAAAAAGAATCGACATTACATTTGGTTCTCCGTCTCCGAGGAGG 2517
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
||||| || || ||||||||| |||| || ||||| || || |||| || || | ||
Sbjct 2287 ATGCAAATCTTCGTTAAAACCCTAACGGGTAAAACCATCACTCTCGAAGTAGAGCCCAGT 2228
Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951
|||| | |||| || |||| ||||| | || ||||| | || || ||
Sbjct 2227 GACACCATCGAAAACGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCCCCAGATCAA 2168
Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011
||||||||||| | ||| ||||||||||| |||||| | || | ||||||||
Sbjct 2167 CAACGTTTAATTTTTGCCGGCAAACAACTCGAAGATGGCCGAACCCTCTCCGATTACAAT 2108
Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059
|| || || || | || | ||| | ||| | |||||| | ||||||
Sbjct 2107 ATTCAAAAGGAATCAACTTTACATCTCGTGCTTCGATTGAGAGGAGGT 2060
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
||||| || || || || ||||| || || |||||||| || |||| || || | |||
Sbjct 2971 ATGCAAATCTTCGTCAAGACCTTGACTGGTAAAACGATTACACTCGAAGTTGAGCCTAGC 2912
Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951
|||| | | |||| || |||| ||||| | ||||| || | || || ||
Sbjct 2911 GACACTATTGAAAACGTCAAGGCCAAAATACAAGATAAAGAGGGAATTCCACCCGATCAA 2852
Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011
|||||| | || | || ||||||||||| |||||| | ||| | || || | |
Sbjct 2851 CAACGTCTCATCTTCGCTGGCAAACAACTCGAAGATGGAAGAACTCTCTCTGACTATAAC 2792
Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059
|| || ||||| | || ||||||||||| | |||||| | || |||
Sbjct 2791 ATCCAAAAAGAATCGACCCTTCATTTAGTCCTTCGATTGAGAGGTGGT 2744
>seq63578
Length=26733
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
||||| || || |||||||| | || || ||||| |||||| | || || ||| || |
Sbjct 11820 ATGCAAATTTTCGTTAAAACGCTCACTGGAAAAACCATAACCTTGGAGGTGGAACCGTCC 11761
Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951
|| | | |||| ||| || | |||||| | ||||||||| |||| ||||||
Sbjct 11760 GATACCATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGCATACCACCAGACCAG 11701
Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011
||||| || || | ||| || ||||| |||||||| | ||| ||| ||||| | |
Sbjct 11700 CAACGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGTACTCTGAGTGATTATAAC 11641
Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058
|| |||||||| |||| ||||| || || | |||| || || ||
Sbjct 11640 ATTCAGAAAGAATCCACTCTTCACTTGGTACTCAGATTACGTGGTGG 11594
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
||||| || || || ||||| ||||||||||| || || ||| | || |||||| || |
Sbjct 11592 ATGCAAATTTTCGTGAAAACTTTAACCGGCAAGACTATTACCTTGGAAGTCGAACCGTCC 11533
Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951
|| | | || | || || | |||||| | |||||||| | ||| |||||||
Sbjct 11532 GATACCATCGAGAACGTGAAAGCTAAAATTCAAGATAAAGAAGGTATCCCGCCTGACCAG 11473
Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011
|| | || || | || || || ||| |||||||| | || | | |||||| |
Sbjct 11472 CAGAGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACGTTAAGCGATTATAAT 11413
Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACG 25046
|| ||||| ||| |||| |||||||| || || ||
Sbjct 11412 ATTCAGAAGGAGTCCACCCTTCATTTGGTTTTGCG 11378
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
||||| || || || ||||| | ||||| ||||| || || | || || ||| | |
Sbjct 12732 ATGCAAATCTTCGTAAAAACTCTTACCGGAAAAACCATTACTTTGGAAGTTGAACCATCC 12673
Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951
|| | | |||| || || | || ||| | |||||||| | || |||||||
Sbjct 12672 GATACGATCGAAAACGTCAAAGCCAAGATTCAAGATAAAGAAGGAATCCCACCTGACCAG 12613
Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011
||||| ||||| | ||| || |||||| |||||||| | || ||| ||| ||||
Sbjct 12612 CAACGGTTAATTTTTGCCGGTAAACAATTGGAAGATGGCCGCACATTGAGCGACTACAAT 12553
Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059
|| || ||||| | ||||||||||| || |||| | ||||| |||
Sbjct 12552 ATTCAAAAAGAATCGACGCTTCATTTGGTCCTACGTCTTCGCGGCGGT 12505
>seq52934
Length=6696
Score = 86.0 bits (94), Expect = 5e-12
Identities = 133/190 (70%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
|||||||| || || |||||| |||| || |||||||| || |||| |||||| |
Sbjct 4155 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACGATCACTCTCGAAGTCGAACCTTCG 4096
Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951
|| | | | |||| ||| || | |||||| | |||||||| | || ||||||
Sbjct 4095 GATACTATTGAAAATGTAAAAGCTAAAATTCAAGATAAAGAAGGTATCCCTCCCGACCAG 4036
Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011
|||||||| || | || || || ||| |||||||| | ||| | ||||||||
Sbjct 4035 CAACGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGTAGAACTCTATCCGATTACAAT 3976
Query 25012 ATACAGAAAG 25021
|| || ||||
Sbjct 3975 ATCCAAAAAG 3966
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 417894185741120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |