Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq13914 145 1e-29 seq7792 145 1e-29 seq19381 131 2e-25 seq59517 122 1e-22 >seq13914 Length=11729 Score = 145 bits (160), Expect = 1e-29 Identities = 165/221 (75%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 |||||||| |||||||| || || || ||||| ||||||||||| | |||||| Sbjct 7888 TCGTCTCTTGATATTAATTCATTGCTGAAAGTCAGTCCAGGCATTAGGCCCCTTTTTTTA 7947 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33725 ||||||||||| | ||| || ||| |||||||| || ||||| || |||||||| || Sbjct 7948 AGCCAAAATATCGCAGCAAAACTTCCAGAAAAGAAAATACCTTCGACAGCAGCAAAAGCT 8007 Query 33726 ATAAGTCTCTCTCCATAACCGGCG---CTGTCATGTATCCACTTTTGAGCCCAATCGGCC 33782 || | ||| |||||| || ||| |||||| ||||||||| ||||| || || Sbjct 8008 ATGATTCTTTCTCCAAAAGTCGCGTTTTTGTCATTTATCCACTTCAACGCCCAGTCAGCT 8067 Query 33783 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33823 || | || ||||| ||||| ||||| |||||||| || || Sbjct 8068 TTTCTCTTAACACACGGCATGGTTTCAATGGCATTGAATAG 8108 Score = 127 bits (140), Expect = 3e-24 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| ||||| || ||||| | || |||||||| ||||| | || ||||| | Sbjct 8198 ATCTTTAATGTAAGTGTCAATCAACAAGCTGTACATTTCTGAATGTACATTCTCAATTGT 8257 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || ||||||||||| ||| |||| || || | ||| || |||||| |||| || || Sbjct 8258 GATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATTTGTACTTCTTGGAAAAAACGCTC 8317 Query 33962 TGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021 ||||||||||||| || || |||||| ||| || ||||| || || || || || Sbjct 8318 GACTAAATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGGGAAAT 8377 Query 34022 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 34066 || | || || || ||| | ||||| | |||||| ||| ||| Sbjct 8378 GAATTTCTTCTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATC 8422 Score = 86.0 bits (94), Expect = 8e-12 Identities = 142/201 (71%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469 ||||||||| || || ||||| ||||| |||||||| | ||||| |||||||| || | Sbjct 7615 CAATCTATCAGCTACAAATTCAATATACGTTTTCATTAATTCACTGTTCATTCCAATCAT 7674 Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTA-TAA 33528 || || | ||| |||| | ||||||||||||||| |||| || || | || Sbjct 7675 CGATACGGGCAAAGCATCAGTCAAAAATTCTTGTTCAAT-GATAACG---GCGTCACGAA 7730 Query 33529 TAAATCTAACGGTTTCTT---CACTCGGTGGATGTAATAAATGTTTAAACATCAAACATG 33585 ||| | | |||||| |||| ||| || | |||||||| |||||||| || | Sbjct 7731 TAATTTCGGTGATTTCTTCAACACTGGGTTTTTGAACCAAATGTTTGAACATCAAGCAAG 7790 Query 33586 CGAAATCGCAGTGCAGACCCT 33606 | |||||| || | ||||| Sbjct 7791 CAAAATCGGTATGTAAACCCT 7811 >seq7792 Length=27931 Score = 145 bits (160), Expect = 1e-29 Identities = 158/209 (76%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 33618 ATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33677 |||||||||||| || || | ||| ||||||||||| |||||||||||||||||||| Sbjct 19189 ATTAATTCGTTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTTTAAGCCAAAATATT 19248 Query 33678 GAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCT 33737 | ||| || ||| ||||||||||| ||||| || |||||||| || || | || ||| Sbjct 19249 GCAGCAAAACTTCCTGAAAAGAAGATGCCTTCGACGGCAGCAAACGCTATGATCCTTTCT 19308 Query 33738 CCATAACCGGC---GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 33794 ||| || || | ||| |||||| || ||||| || || ||||| || ||| Sbjct 19309 CCAAAAGTAGCATTTTTATCAGCTATCCATTTCAACGCCCAGTCTGCTTTCTTCTTAACA 19368 Query 33795 CAAGGCATCGTTTCTATGGCATTAAAGAG 33823 |||||||| ||||| || ||||| || || Sbjct 19369 CAAGGCATTGTTTCAATAGCATTGAACAG 19397 Score = 125 bits (138), Expect = 9e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 33833 TTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33892 |||| || ||| || || || || || ||||| | ||| |||||||| ||||||| || Sbjct 19476 TTCAGTAGGATCCTTGACGTATGTGTCTATCAATAAACTGTACATTTCTGAATGAACATT 19535 Query 33893 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 33952 || |||| ||||||||||||||||| ||||||| |||| || || |||||| | | Sbjct 19536 CTCTATGGTGATCTGAAATCCGTAGAAGAATCTAGCTTCGGGGATTTGAACTTCTTGAAA 19595 Query 33953 AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATAC 34012 || || || |||||||||||||||| || || ||| || || ||||| || | || Sbjct 19596 GAAGCGCTCGACTAAATTTTCATTCACGATACCGTCAGATGCGGCGAAAAATGCAAGAAC 19655 Query 34013 ATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 34066 || || || | || || || ||| | ||||| | ||| || ||| ||| Sbjct 19656 GTGCGAAATGAACTTCTTCTCTTCGGGTTTCAGTTTCTCCCAGTCTCTGAAATC 19709 >seq19381 Length=19756 Score = 131 bits (144), Expect = 2e-25 Identities = 147/195 (75%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 63658 GAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG--AAAG 63715 ||| ||| ||||||| ||||||||||||||||| || ||||| || |||||| | | Sbjct 8703 GAGGAGTGGCCGCATTGAATAAGGTAGGAGAAGCATGAGTAAA--ATATTTCAGGGACAT 8646 Query 63716 TAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACG 63775 || ||| || || |||||| | ||||| ||||| ||||| || || || || || Sbjct 8645 TAAATTATAGGTTTCAATAACAGAGTCGATATCTTCGCCGTGAATACCAACGGCAACTCG 8586 Query 63776 CATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTT 63835 ||| ||||||||||| || | ||| ||||| ||||| |||||||| | |||||||| Sbjct 8585 CATCAACATGTGCTGTGGACGTTCGACAATACGATTGTTGATTTTCAATAGATAGGATTT 8526 Query 63836 TTCCAAAGTTTTAAA 63850 ||||| ||| | ||| Sbjct 8525 TTCCAGAGTCTGAAA 8511 Score = 107 bits (118), Expect = 2e-18 Identities = 203/299 (68%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 63215 CAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 63274 ||||| ||||||| | ||||||||||| ||| | | | || | | || | | | Sbjct 9211 CAATCCGGGACATTGACTGGGACACATCAAACTCCATTTTTCATCTTTTTCGACCCTTCT 9152 Query 63275 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTT 63334 ||| || || || ||||| | || ||||| ||| || | | | || || || Sbjct 9151 CATGAATTCGTCGGGGATCCACATTGCGTAAAATAAATCCCTAGCGCGAGACTCTTCTTT 9092 Query 63335 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63394 || | ||| ||| || || | || | | |||||| | |||||| ||||||||||| Sbjct 9091 ACCAGAATTTTTTCGCAGCTCTAAAAATTCAAAAATATCCGCATGCCAAGGTTCCAAGTA 9032 Query 63395 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63454 || || | | | || || | |||||| ||||| || || | |||||| || |||||||| Sbjct 9031 AATAGCAAAAGCACCCGGTCTTTTGTTGCCTCCTTGGTCCACGTATCTGGCTGTGTTATT 8972 Query 63455 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGC 63513 || || | | ||| ||||| | ||| ||||||| || || || || | |||||||| Sbjct 8971 GTATACGCGAAGCATCGGAATTAGACCATTTGATACGCCGTTTGTTCCAGCGATATAGC 8913 Score = 95.1 bits (104), Expect = 2e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 62604 CCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTA 62663 || |||||| | ||| ||| | || || | |||||| || | || | ||| |||| Sbjct 10026 CCTTTACTGACTGGCGAACCTTCGTAGGTTTTATATGGACCGTATTTTTGAGCAAGTTCG 9967 Query 62664 CAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGT 62723 || ||||| ||||||||||||||||| | ||||||||| |||| ||| || ||| Sbjct 9966 CAGCTCGCTTCTAATGCACCGTAATACAAGGTTTCAAAAATCTGTACATTAAGTAATTGC 9907 Query 62724 GCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACA 62783 | | ||| ||||||||| | | | ||||| ||| ||||||||||||| | Sbjct 9906 GACTGTTCGCTTTCAAATGGAAGTCTCATCAAGATAAATAGGTCGGCTAATCCTTGAATA 9847 Query 62784 CCAATACCGATAGGTCTATG 62803 || || || || |||||||| Sbjct 9846 CCTATTCCAATCGGTCTATG 9827 >seq59517 Length=19559 Score = 122 bits (134), Expect = 1e-22 Identities = 141/188 (75%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||| || |||||||||||||| |||| | ||| || || || ||||| ||||| | Sbjct 14730 TACCTGAAATTCTCCAGACAAGACTCGTCTAGTATACATGTTTGAAGTATAAGGTTCGAA 14671 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 || ||||||||||| |||||||||||||| || || || |||||||| || | | || Sbjct 14670 AGATTCATTATTTCCTAAAATTTGAGCAGTGGAAGCGGTAGGCATAGGAGCAAGAAGTAG 14611 Query 62507 ACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTA--GATGTTCCCAATTCCAAAGA 62564 | |||||||| |||||| | | ||||| ||||||| ||||| ||||| ||| | | Sbjct 14610 AGAATTTCTAACGCCGTATTGTTTAATTTTTTCTTTTAACGATGT--CCAATCCCATAAA 14553 Query 62565 TCCGACGG 62572 || || || Sbjct 14552 TCAGATGG 14545 Score = 111 bits (122), Expect = 2e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 63669 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63728 ||| | || | |||||| |||||||| || || || | || || | | || || || Sbjct 13019 GCACTGAAAAGGGTAGGCGAAGCGTGAGTGAAATATCTCTCCGATAACAAGTTATAAGTT 12960 Query 63729 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63788 ||||| |||| ||| ||||| |||||||||||| || || ||||| ||||| || Sbjct 12959 TCAATCGCTGCGTCGATATCTTCAGCATGAATTCCTACAGCAACTCGCATCAACATATGT 12900 Query 63789 TGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63844 || || | ||| |||| ||| |||||||||||| || || |||||||||||||| Sbjct 12899 TGTGGGCGTTCTACAACTTTTCCGTTTATTTTCAATAAATACGATTTTTCCAAAGT 12844 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 62969 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGT 63028 |||||||| || | | ||||| | || ||||| || | |||||||| || ||||| Sbjct 13922 TACCTCATCAGGAGCACTATATTCGACGATTTCAGTACACAAATTACTACTTTTAATAGT 13863 Query 63029 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 63088 |||||||||||| ||||| ||| | ||||| ||||| || || | ||| | || || Sbjct 13862 TCCTAAATTTTGATGATTGGATTTTCTATTACAGGCATCTTTGTACAACATGTAAGGTGT 13803 Query 63089 ACCAGTTTCAATCTGAGATTCTATAATCGC 63118 || |||||||| ||||| |||| ||| || Sbjct 13802 TCCTGTTTCAATTTGAGAGTCTAAAATTGC 13773 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| |||||||| || | | ||||| | |||| || || || |||| Sbjct 15144 TCCAGCCGTAGAAATGCATCGAAGTCAAAGTCGAATAGTTTGGATTCGCCATGTGTATAT 15085 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | | ||| |||||| ||||| ||||| | || ||||||||||| | || || | Sbjct 15084 TTAAACTTTGCGATTGATCAATGAAAGCTCCACGATCGGCAGCCATTTTCAAGACGGTTT 15025 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 62281 ||||| ||||||||| | ||||||||| | ||| ||| | ||| ||||| Sbjct 15024 TTTGTTTAATTTCCCATACAGTTTTATACAGCTC-CTTCAAATCATCTGG 14976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629184743530080