Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq19381 140 3e-28
seq13914 111 1e-19
seq59517 107 2e-18
seq7792 84.2 2e-11
>seq19381
Length=19756
Score = 140 bits (154), Expect = 3e-28
Identities = 290/429 (68%), Gaps = 2/429 (0%)
Strand=Plus/Minus
Query 37966 AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCC 38025
||||| ||||||| | |||||||| | | ||||| |||||||||||| || | | |
Sbjct 9210 AATCCGGGACATTGACTGGGACACATCAAACTCCATTTTTCATCTTTTTCGACCCTTCTC 9151
Query 38026 ATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTC 38085
|| ||| || || | ||| | ||| ||||||||| | | | | | ||||| ||
Sbjct 9150 ATGAATTCGTCGGGGATCCACATTGCGTAAAATAAATCCCTAGCGCGAGACTCTTCTTTA 9091
Query 38086 CCTACATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATA 38144
|| ||| |||| |||| || ||| || || ||||| || ||||| ||||| | ||
Sbjct 9090 CCAGAATTTTTTC-GCAGCTCTAAAAATTCAAAAATATCCGCATGCCAAGGTTCCAAGTA 9032
Query 38145 AATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATT 38204
||| | | || || |||||||| | ||||| || | | ||||| ||||||||||
Sbjct 9031 AATAGCAAAAGCACCCGGTCTTTTGTTGCCTCCTTGGTCCACGTATCTGGCTGTGTTATT 8972
Query 38205 ATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGT 38264
|||| | | ||| || | || |||||| ||| ||||||| | || | ||||| |
Sbjct 8971 GTATACGCGAAGCATCGGAATTAGACCATTTGATACGCCGTTTGTTCCAGCGATATAGCT 8912
Query 38265 ACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAA 38324
| |||||| || ||| |||||| ||||| || || ||| || || |
Sbjct 8911 ATTGGTAGCTCTAATGCAGTGTATATGCAATCCAATTCCGCCAGCTGATTTAGAAATCAT 8852
Query 38325 AGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTAT 38384
||||| | || || || | || |||||||| |||||||| || | || | || |
Sbjct 8851 GGCGCAATTCTTCAAAGTGTTGAAGATACCTTCGATACTGTCGTCTTCCATGGCTACCAG 8792
Query 38385 AAAACAACT 38393
||||||||
Sbjct 8791 GAAACAACT 8783
>seq13914
Length=11729
Score = 111 bits (122), Expect = 1e-19
Identities = 158/222 (71%), Gaps = 3/222 (1%)
Strand=Plus/Plus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||||||||| ||||| |||||| || || | ||| ||||| | || | |||||
Sbjct 7886 CTTCGTCTCTTGATATTAATTCATTGCTGAAAGTCAGTCCAGGCATTAGGCCCCTTTTTT 7945
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
| | ||||||||| |||||||| ||||||||||| || || || ||||| ||||| |
Sbjct 7946 TAAGCCAAAATATCGCAGCAAAACTTCCAGAAAAGAAAATACCTTCGACAGCAGCAAAAG 8005
Query 11772 CTACTACTCTTTCTCCATA---TACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAG 11828
||| | |||||||||| | | || ||| | |||||| || ||||| ||||
Sbjct 8006 CTATGATTCTTTCTCCAAAAGTCGCGTTTTTGTCATTTATCCACTTCAACGCCCAGTCAG 8065
Query 11829 CTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA 11870
|||| | || || || ||| ||||| || || || ||||
Sbjct 8066 CTTTTCTCTTAACACACGGCATGGTTTCAATGGCATTGAATA 8107
>seq59517
Length=19559
Score = 107 bits (118), Expect = 2e-18
Identities = 155/217 (71%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| |||||||| || |||| ||| ||||| || || |||||| ||||| |
Sbjct 14729 ACCTGAAATTCTCCAGACAAGACTCGTCTAGTATACATGTTTGAAGTATAAGGTTCGAAA 14670
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
|| |||||||| | ||| ||||||| || || || |||||||| || || | || ||
Sbjct 14669 GATTCATTATTTCCTAAAATTTGAGCAGTGGAAGCGGTAGGCATAGGAGCAAGAAGTAGA 14610
Query 37258 CTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCT 37317
|||||| | || | | |||||| | | ||||| ||||||||||||||||
Sbjct 14609 GAATTTCTAACGCCGTATTGTTTAATTTTTTCTTTTAACGATGTCCAATCCCATAAATCA 14550
Query 37318 GTTGG--GTTCTTTAACCACATATCATATTGTAGAAT 37352
| ||| | | || ||||||||| || || | |||
Sbjct 14549 GATGGCTGGACGTT--CCACATATCGTACTGCAAAAT 14515
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 38166 TTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTAC 38225
||||| ||||| |||| | |||||| || | |||| | | | |||||| || ||
Sbjct 13342 TTTATTGCCTCCTTGATCGACATATCTTGCTACGCTATTGAACACACGTAACATGGGCAC 13283
Query 38226 TATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACT 38285
|||||||||||| || || |||| | |||||| || ||||||| ||||||
Sbjct 13282 AATACCATTAGATACTCCATTGGTACCAGTTATATAGCTATTAGTAGCTCGAATATTATG 13223
Query 38286 TATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAA-CGTAT 38344
||| | ||||| ||||| || ||| || || | ||| || ||| ||| ||||
Sbjct 13222 TATGTGTAGTCCTACGCCACCAGCGGATTTGGAGATCAGAGCACA-TGTAGTAAGGGTAT 13164
Query 38345 CAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTA 38394
||| |||||||| ||||| || |||| || | | | ||||||||||
Sbjct 13163 TAAAAATACCTTCAATACTATCGTCCTCCATGGCGATGAGAAAACAACTA 13114
Score = 82.4 bits (90), Expect = 7e-11
Identities = 126/180 (70%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 37968 TCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCAT 38027
||| ||||| | | || ||||| ||| ||||| | | ||| ||||||| | | |||
Sbjct 13603 TCCAGGACACTGACTAGGGCACATAAGACTCCATTTTCCTTCTGTTTCTACTCTTCGCAT 13544
Query 38028 AAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCC 38087
||| |||||||| |||||| ||| ||||| |||| | | || |||||| | |||
Sbjct 13543 GAATTCATCAGGTATCCATAACGCATAAAATAGATCTCTAGCTCGGATTTCTTCATGCCC 13484
Query 38088 TACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAAT 38147
||| || | | || |||||||||||| || || ||||| ||||| | |||||
Sbjct 13483 AGTATTTTTACGCAGATCTAAAAAATCGAATATGTCCGCATGCCACGGTTCGAGGTAAAT 13424
>seq7792
Length=27931
Score = 84.2 bits (92), Expect = 2e-11
Identities = 115/161 (71%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 11897 ACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGA 11956
|| ||||| ||||| |||||||| |||||||||||||||| ||| || || | || |||
Sbjct 19492 ACGTATGTGTCTATCAATAAACTGTACATTTCTGAATGAACATTCTCTATGGTGATCTGA 19551
Query 11957 AATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAA 12016
||||| ||||| ||| || || | || || || | | || | || |||||
Sbjct 19552 AATCCGTAGAAGAATCTAGCTTCGGGGATTTGAACTTCTTGAAAGAAGCGCTCGACTAAA 19611
Query 12017 TTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAG 12057
|| ||||| || ||||| ||| | || |||||||| ||
Sbjct 19612 TTTTCATTCACGATACCGTCAGATGCGGCGAAAAATGCAAG 19652
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468054014567840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |