Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq19381 140 3e-28 seq13914 111 1e-19 seq59517 107 2e-18 seq7792 84.2 2e-11 >seq19381 Length=19756 Score = 140 bits (154), Expect = 3e-28 Identities = 290/429 (68%), Gaps = 2/429 (0%) Strand=Plus/Minus Query 37966 AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCC 38025 ||||| ||||||| | |||||||| | | ||||| |||||||||||| || | | | Sbjct 9210 AATCCGGGACATTGACTGGGACACATCAAACTCCATTTTTCATCTTTTTCGACCCTTCTC 9151 Query 38026 ATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTC 38085 || ||| || || | ||| | ||| ||||||||| | | | | | ||||| || Sbjct 9150 ATGAATTCGTCGGGGATCCACATTGCGTAAAATAAATCCCTAGCGCGAGACTCTTCTTTA 9091 Query 38086 CCTACATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATA 38144 || ||| |||| |||| || ||| || || ||||| || ||||| ||||| | || Sbjct 9090 CCAGAATTTTTTC-GCAGCTCTAAAAATTCAAAAATATCCGCATGCCAAGGTTCCAAGTA 9032 Query 38145 AATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATT 38204 ||| | | || || |||||||| | ||||| || | | ||||| |||||||||| Sbjct 9031 AATAGCAAAAGCACCCGGTCTTTTGTTGCCTCCTTGGTCCACGTATCTGGCTGTGTTATT 8972 Query 38205 ATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGT 38264 |||| | | ||| || | || |||||| ||| ||||||| | || | ||||| | Sbjct 8971 GTATACGCGAAGCATCGGAATTAGACCATTTGATACGCCGTTTGTTCCAGCGATATAGCT 8912 Query 38265 ACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAA 38324 | |||||| || ||| |||||| ||||| || || ||| || || | Sbjct 8911 ATTGGTAGCTCTAATGCAGTGTATATGCAATCCAATTCCGCCAGCTGATTTAGAAATCAT 8852 Query 38325 AGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTAT 38384 ||||| | || || || | || |||||||| |||||||| || | || | || | Sbjct 8851 GGCGCAATTCTTCAAAGTGTTGAAGATACCTTCGATACTGTCGTCTTCCATGGCTACCAG 8792 Query 38385 AAAACAACT 38393 |||||||| Sbjct 8791 GAAACAACT 8783 >seq13914 Length=11729 Score = 111 bits (122), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||||||||| ||||| |||||| || || | ||| ||||| | || | ||||| Sbjct 7886 CTTCGTCTCTTGATATTAATTCATTGCTGAAAGTCAGTCCAGGCATTAGGCCCCTTTTTT 7945 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 | | ||||||||| |||||||| ||||||||||| || || || ||||| ||||| | Sbjct 7946 TAAGCCAAAATATCGCAGCAAAACTTCCAGAAAAGAAAATACCTTCGACAGCAGCAAAAG 8005 Query 11772 CTACTACTCTTTCTCCATA---TACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAG 11828 ||| | |||||||||| | | || ||| | |||||| || ||||| |||| Sbjct 8006 CTATGATTCTTTCTCCAAAAGTCGCGTTTTTGTCATTTATCCACTTCAACGCCCAGTCAG 8065 Query 11829 CTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA 11870 |||| | || || || ||| ||||| || || || |||| Sbjct 8066 CTTTTCTCTTAACACACGGCATGGTTTCAATGGCATTGAATA 8107 >seq59517 Length=19559 Score = 107 bits (118), Expect = 2e-18 Identities = 155/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| |||||||| || |||| ||| ||||| || || |||||| ||||| | Sbjct 14729 ACCTGAAATTCTCCAGACAAGACTCGTCTAGTATACATGTTTGAAGTATAAGGTTCGAAA 14670 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 || |||||||| | ||| ||||||| || || || |||||||| || || | || || Sbjct 14669 GATTCATTATTTCCTAAAATTTGAGCAGTGGAAGCGGTAGGCATAGGAGCAAGAAGTAGA 14610 Query 37258 CTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCT 37317 |||||| | || | | |||||| | | ||||| |||||||||||||||| Sbjct 14609 GAATTTCTAACGCCGTATTGTTTAATTTTTTCTTTTAACGATGTCCAATCCCATAAATCA 14550 Query 37318 GTTGG--GTTCTTTAACCACATATCATATTGTAGAAT 37352 | ||| | | || ||||||||| || || | ||| Sbjct 14549 GATGGCTGGACGTT--CCACATATCGTACTGCAAAAT 14515 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 38166 TTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTAC 38225 ||||| ||||| |||| | |||||| || | |||| | | | |||||| || || Sbjct 13342 TTTATTGCCTCCTTGATCGACATATCTTGCTACGCTATTGAACACACGTAACATGGGCAC 13283 Query 38226 TATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACT 38285 |||||||||||| || || |||| | |||||| || ||||||| |||||| Sbjct 13282 AATACCATTAGATACTCCATTGGTACCAGTTATATAGCTATTAGTAGCTCGAATATTATG 13223 Query 38286 TATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAA-CGTAT 38344 ||| | ||||| ||||| || ||| || || | ||| || ||| ||| |||| Sbjct 13222 TATGTGTAGTCCTACGCCACCAGCGGATTTGGAGATCAGAGCACA-TGTAGTAAGGGTAT 13164 Query 38345 CAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTA 38394 ||| |||||||| ||||| || |||| || | | | |||||||||| Sbjct 13163 TAAAAATACCTTCAATACTATCGTCCTCCATGGCGATGAGAAAACAACTA 13114 Score = 82.4 bits (90), Expect = 7e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 37968 TCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCAT 38027 ||| ||||| | | || ||||| ||| ||||| | | ||| ||||||| | | ||| Sbjct 13603 TCCAGGACACTGACTAGGGCACATAAGACTCCATTTTCCTTCTGTTTCTACTCTTCGCAT 13544 Query 38028 AAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCC 38087 ||| |||||||| |||||| ||| ||||| |||| | | || |||||| | ||| Sbjct 13543 GAATTCATCAGGTATCCATAACGCATAAAATAGATCTCTAGCTCGGATTTCTTCATGCCC 13484 Query 38088 TACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAAT 38147 ||| || | | || |||||||||||| || || ||||| ||||| | ||||| Sbjct 13483 AGTATTTTTACGCAGATCTAAAAAATCGAATATGTCCGCATGCCACGGTTCGAGGTAAAT 13424 >seq7792 Length=27931 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 11897 ACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGA 11956 || ||||| ||||| |||||||| |||||||||||||||| ||| || || | || ||| Sbjct 19492 ACGTATGTGTCTATCAATAAACTGTACATTTCTGAATGAACATTCTCTATGGTGATCTGA 19551 Query 11957 AATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAA 12016 ||||| ||||| ||| || || | || || || | | || | || ||||| Sbjct 19552 AATCCGTAGAAGAATCTAGCTTCGGGGATTTGAACTTCTTGAAAGAAGCGCTCGACTAAA 19611 Query 12017 TTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAG 12057 || ||||| || ||||| ||| | || |||||||| || Sbjct 19612 TTTTCATTCACGATACCGTCAGATGCGGCGAAAAATGCAAG 19652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468054014567840