Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq7792 141 1e-28
seq13914 140 4e-28
seq59517 129 8e-25
seq19381 123 3e-23
>seq7792
Length=27931
Score = 141 bits (156), Expect = 1e-28
Identities = 157/209 (75%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 36194 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 36253
||||||||||| || || | ||| ||||||||||| ||||||||||||||||||||
Sbjct 19189 ATTAATTCGTTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTTTAAGCCAAAATATT 19248
Query 36254 GACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCT 36313
| ||||| ||| |||||||| || ||||| || || ||||| || || | || |||
Sbjct 19249 GCAGCAAAACTTCCTGAAAAGAAGATGCCTTCGACGGCAGCAAACGCTATGATCCTTTCT 19308
Query 36314 CCATAACCGGCA---CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 36370
||| || ||| | ||| |||||| || ||||| || || ||||| || |||
Sbjct 19309 CCAAAAGTAGCATTTTTATCAGCTATCCATTTCAACGCCCAGTCTGCTTTCTTCTTAACA 19368
Query 36371 CAAGGCATTGTCTCTATAGCATTAAAGAG 36399
||||||||||| || |||||||| || ||
Sbjct 19369 CAAGGCATTGTTTCAATAGCATTGAACAG 19397
Score = 125 bits (138), Expect = 9e-24
Identities = 132/174 (76%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 36409 TTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 36468
|||| || ||| || || ||||| || ||||| | ||| |||||||| ||||||| ||
Sbjct 19476 TTCAGTAGGATCCTTGACGTATGTGTCTATCAATAAACTGTACATTTCTGAATGAACATT 19535
Query 36469 TTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 36528
|| |||| || |||||||||||||| ||||||| |||| || || |||||| | |
Sbjct 19536 CTCTATGGTGATCTGAAATCCGTAGAAGAATCTAGCTTCGGGGATTTGAACTTCTTGAAA 19595
Query 36529 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 36582
|| || || |||||||||||||||| || |||||| || || ||||| ||
Sbjct 19596 GAAGCGCTCGACTAAATTTTCATTCACGATACCGTCAGATGCGGCGAAAAATGC 19649
Score = 84.2 bits (92), Expect = 3e-11
Identities = 75/94 (80%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 35853 ACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTT 35912
|||||||||| |||| | ||||| || || | |||||||| ||||| |||||||| |
Sbjct 18703 ACATAACTCCACTTTTCTTATATTCTCCAACTCTCTTTTCGAAGAAATTCGTTTTACCAT 18762
Query 35913 CTAATGATATATTTTCCATGAAATCGAATGGATT 35946
|| |||||||||||||| |||||||| || ||
Sbjct 18763 TCAAGGATATATTTTCCATAAAATCGAAAGGGTT 18796
>seq13914
Length=11729
Score = 140 bits (154), Expect = 4e-28
Identities = 164/221 (74%), Gaps = 3/221 (1%)
Strand=Plus/Plus
Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241
|||||||| |||||||| ||| || || ||||| ||||||||||| | ||||||
Sbjct 7888 TCGTCTCTTGATATTAATTCATTGCTGAAAGTCAGTCCAGGCATTAGGCCCCTTTTTTTA 7947
Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 36301
||||||||||| | ||||| ||||||||||||||| ||||| || || ||||| ||
Sbjct 7948 AGCCAAAATATCGCAGCAAAACTTCCAGAAAAGAAAATACCTTCGACAGCAGCAAAAGCT 8007
Query 36302 ATAAGTCTCTCTCCATAA---CCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCC 36358
|| | ||| |||||| || || |||||| ||||||||| ||||| || ||
Sbjct 8008 ATGATTCTTTCTCCAAAAGTCGCGTTTTTGTCATTTATCCACTTCAACGCCCAGTCAGCT 8067
Query 36359 TTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 36399
|| | || ||||| ||||| || || || ||||| || ||
Sbjct 8068 TTTCTCTTAACACACGGCATGGTTTCAATGGCATTGAATAG 8108
Score = 127 bits (140), Expect = 3e-24
Identities = 163/225 (72%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477
|||||||| || || |||||||| | || |||||||| ||||| | || ||||| |
Sbjct 8198 ATCTTTAATGTAAGTGTCAATCAACAAGCTGTACATTTCTGAATGTACATTCTCAATTGT 8257
Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537
|||||||||||||| ||| |||| || || | ||| ||||||||| |||| || ||
Sbjct 8258 GATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATTTGTACTTCTTGGAAAAAACGCTC 8317
Query 36538 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 36597
||||||||||||| || || || ||| ||| || ||||| || || || || ||
Sbjct 8318 GACTAAATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGGGAAAT 8377
Query 36598 AAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATC 36642
|| | || || | ||| | ||||| | |||||| ||| |||
Sbjct 8378 GAATTTCTTCTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATC 8422
Score = 95.1 bits (104), Expect = 2e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045
||||||||| || |||||||| ||||| |||||||| | ||||| |||||||| || |
Sbjct 7615 CAATCTATCAGCTACAAATTCAATATACGTTTTCATTAATTCACTGTTCATTCCAATCAT 7674
Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105
|| || | ||| |||| | ||||||||||||||| || ||||| |||||
Sbjct 7675 CGATACGGGCAAAGCATCAGTCAAAAATTCTTGTTCAATGATAACGGCGTCACGAATAAT 7734
Query 36106 AGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 36165
| | | ||| |||| ||| | | |||||||| |||||||| || || ||
Sbjct 7735 TTCGGTGATTTCTTCAACACTGGGTTTTTGAACCAAATGTTTGAACATCAAGCAAGCAAA 7794
Query 36166 ATCGCAGTGTAGACCCT 36182
|||| |||| |||||
Sbjct 7795 ATCGGTATGTAAACCCT 7811
Score = 86.0 bits (94), Expect = 8e-12
Identities = 77/97 (79%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 35850 GAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTAC 35909
|| |||| ||||| |||| | |||||| || || | ||| || || ||||| |||||||
Sbjct 7395 GAAACATGACTCCACTTTTCTTGTATTCGCCTACTCTTTTCTCAAAGAAATTCGTTTTAC 7454
Query 35910 CTTCTAATGATATATTTTCCATGAAATCGAATGGATT 35946
| | || |||||||||||||| ||||||||||| ||
Sbjct 7455 CGTTTAGAGATATATTTTCCATAAAATCGAATGGGTT 7491
>seq59517
Length=19559
Score = 129 bits (142), Expect = 8e-25
Identities = 140/186 (75%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239
||| ||||||||||||||||| |||| | ||| || || || ||||| ||||| |
Sbjct 14730 TACCTGAAATTCTCCAGACAAGACTCGTCTAGTATACATGTTTGAAGTATAAGGTTCGAA 14671
Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299
||| ||||||||||| |||||||||||||| || || || |||||||| || | | ||
Sbjct 14670 AGATTCATTATTTCCTAAAATTTGAGCAGTGGAAGCGGTAGGCATAGGAGCAAGAAGTAG 14611
Query 65300 ACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 65359
| |||||||| |||||| | | ||||| ||||||| | | ||||| ||| | |||
Sbjct 14610 AGAATTTCTAACGCCGTATTGTTTAATTTTTTCTTTTAACGATGTCCAATCCCATAAATC 14551
Query 65360 CGACGG 65365
|| ||
Sbjct 14550 AGATGG 14545
Score = 102 bits (112), Expect = 1e-16
Identities = 128/176 (73%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 66462 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 66521
||| | || | |||||| |||||||| || || || | || || | | || || ||
Sbjct 13019 GCACTGAAAAGGGTAGGCGAAGCGTGAGTGAAATATCTCTCCGATAACAAGTTATAAGTT 12960
Query 66522 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 66581
||||| |||| ||| ||||| |||||||||||| || || ||||| ||||| ||
Sbjct 12959 TCAATCGCTGCGTCGATATCTTCAGCATGAATTCCTACAGCAACTCGCATCAACATATGT 12900
Query 66582 TGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 66637
|| || | ||| || | || |||||||||||| || || ||||||||||||||
Sbjct 12899 TGTGGGCGTTCTACAACTTTTCCGTTTATTTTCAATAAATACGATTTTTCCAAAGT 12844
Score = 91.5 bits (100), Expect = 2e-13
Identities = 110/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 65762 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGT 65821
|||||||| || | | ||||| | || ||||| || | |||||||| || || ||
Sbjct 13922 TACCTCATCAGGAGCACTATATTCGACGATTTCAGTACACAAATTACTACTTTTAATAGT 13863
Query 65822 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 65881
|||||||||||| ||||| ||| | ||||| ||||| || || | ||| | || ||
Sbjct 13862 TCCTAAATTTTGATGATTGGATTTTCTATTACAGGCATCTTTGTACAACATGTAAGGTGT 13803
Query 65882 ACCAGTTTCAATCTGAGATTCTATAATCGC 65911
|| |||||||| ||||| |||| ||| ||
Sbjct 13802 TCCTGTTTCAATTTGAGAGTCTAAAATTGC 13773
Score = 87.8 bits (96), Expect = 2e-12
Identities = 123/170 (72%), Gaps = 2/170 (1%)
Strand=Plus/Minus
Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965
|||| ||||| |||||||| || | | ||||| | |||| || || || ||||
Sbjct 15144 TCCAGCCGTAGAAATGCATCGAAGTCAAAGTCGAATAGTTTGGATTCGCCATGTGTATAT 15085
Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025
| | | ||| |||||| ||||| ||||| | || ||||||||||| | || || |
Sbjct 15084 TTAAACTTTGCGATTGATCAATGAAAGCTCCACGATCGGCAGCCATTTTCAAGACGGTTT 15025
Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 65074
||||| ||||||||| | ||||||||| | ||| ||| | ||| |||||
Sbjct 15024 TTTGTTTAATTTCCCATACAGTTTTATACAGCTC-CTTCAAATCATCTGG 14976
>seq19381
Length=19756
Score = 123 bits (136), Expect = 3e-23
Identities = 140/186 (75%), Gaps = 4/186 (2%)
Strand=Plus/Minus
Query 66460 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG--AAAGTAGATTGTA 66517
||||||| ||||||||||||||||| || ||||| || |||||| | | || ||| ||
Sbjct 8694 CCGCATTGAATAAGGTAGGAGAAGCATGAGTAAA--ATATTTCAGGGACATTAAATTATA 8637
Query 66518 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 66577
|| |||||| | ||||| ||||| ||||| || || || || ||||| |||||
Sbjct 8636 GGTTTCAATAACAGAGTCGATATCTTCGCCGTGAATACCAACGGCAACTCGCATCAACAT 8577
Query 66578 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 66637
|||||| || | ||| || || ||||| |||||||| | ||||||||||||| |||
Sbjct 8576 GTGCTGTGGACGTTCGACAATACGATTGTTGATTTTCAATAGATAGGATTTTTCCAGAGT 8517
Query 66638 TTTAAA 66643
| |||
Sbjct 8516 CTGAAA 8511
Score = 109 bits (120), Expect = 7e-19
Identities = 204/300 (68%), Gaps = 0/300 (0%)
Strand=Plus/Minus
Query 66008 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 66067
|||||| ||||||| | ||||||||||| ||| | | | || | | || | | |
Sbjct 9211 CAATCCGGGACATTGACTGGGACACATCAAACTCCATTTTTCATCTTTTTCGACCCTTCT 9152
Query 66068 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTT 66127
||| || || || ||||| | || ||||||||| || | | | || || ||
Sbjct 9151 CATGAATTCGTCGGGGATCCACATTGCGTAAAATAAATCCCTAGCGCGAGACTCTTCTTT 9092
Query 66128 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTA 66187
|| | ||| ||| || || | || | | |||||| |||||| |||||||||||
Sbjct 9091 ACCAGAATTTTTTCGCAGCTCTAAAAATTCAAAAATATCCGCATGCCAAGGTTCCAAGTA 9032
Query 66188 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 66247
|| || | | | || || | |||||| ||||| || || | |||||| || ||||||||
Sbjct 9031 AATAGCAAAAGCACCCGGTCTTTTGTTGCCTCCTTGGTCCACGTATCTGGCTGTGTTATT 8972
Query 66248 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCT 66307
|| || | | ||| ||||| | |||||| ||| || || || || | |||||||||
Sbjct 8971 GTATACGCGAAGCATCGGAATTAGACCATTTGATACGCCGTTTGTTCCAGCGATATAGCT 8912
Score = 91.5 bits (100), Expect = 2e-13
Identities = 140/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 65397 CCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCA 65456
|| |||||| | ||| ||| | || || | ||||| || | || | ||| |||||
Sbjct 10026 CCTTTACTGACTGGCGAACCTTCGTAGGTTTTATATGGACCGTATTTTTGAGCAAGTTCG 9967
Query 65457 CAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGT 65516
|| ||||| ||||||||||||||||| | |||||| || |||| ||| || |||
Sbjct 9966 CAGCTCGCTTCTAATGCACCGTAATACAAGGTTTCAAAAATCTGTACATTAAGTAATTGC 9907
Query 65517 GCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACA 65576
| | ||| ||||||||| | | | ||||| ||| ||||||||||||| |
Sbjct 9906 GACTGTTCGCTTTCAAATGGAAGTCTCATCAAGATAAATAGGTCGGCTAATCCTTGAATA 9847
Query 65577 CCAATACCGATAGGTCTATG 65596
|| || || || ||||||||
Sbjct 9846 CCTATTCCAATCGGTCTATG 9827
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657511451516240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |