Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq54470 95.1 1e-14
>seq54470
Length=54847
Score = 95.1 bits (104), Expect = 1e-14
Identities = 226/339 (67%), Gaps = 2/339 (1%)
Strand=Plus/Plus
Query 20997 GTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCG 21056
|| || || ||||||| || || || |||| ||| |||||||| ||||| || || ||
Sbjct 48376 GTAACATGTGCGATCATGTAAGTGAGTAGGGAGTAACTGGCGATATTAAAAGGTACTCCT 48435
Query 21057 AGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAA 21116
| ||||| ||||| || | || |||| || || || | || || | | |||||
Sbjct 48436 AAACCCATATCGGCAGAACGTTGATACATTTGACACGATAATTCGCCATTAACAGCGTAA 48495
Query 21117 AACTGACACAAAAC-GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCA 21175
||||| ||| |||| |||||||||||| || |||||| | | || || |||||
Sbjct 48496 AACTG-CACTAAACAGTGACAAGGAGGTAGGGCCATCTTGGGTAAATCTAACGGATTCCA 48554
Query 21176 CGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACG 21235
||||| | || || | | ||||| ||| | ||||| ||| | || | |
Sbjct 48555 AGCGCATAAAATTATTCTTCTATCGTCGGGGTTATTTTTAATGGTATCAATGACATTTTG 48614
Query 21236 CAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAA 21295
||| || || | || | ||| | ||||| | ||||||| || || ||
Sbjct 48615 CAGTTGATCGATGCCTTTGTTGGAGTAATCGGCGTGCATATCTTTGTACTCAGCTCCGAA 48674
Query 21296 ATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC 21334
|||||||| ||||| ||||| || || || ||||||||
Sbjct 48675 GTGTCTCCATTGGAATCCGTAAACTGGACCGAGATCGCC 48713
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427356905981280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |