Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq54470 95.1 1e-14 >seq54470 Length=54847 Score = 95.1 bits (104), Expect = 1e-14 Identities = 226/339 (67%), Gaps = 2/339 (1%) Strand=Plus/Plus Query 20997 GTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCG 21056 || || || ||||||| || || || |||| ||| |||||||| ||||| || || || Sbjct 48376 GTAACATGTGCGATCATGTAAGTGAGTAGGGAGTAACTGGCGATATTAAAAGGTACTCCT 48435 Query 21057 AGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAA 21116 | ||||| ||||| || | || |||| || || || | || || | | ||||| Sbjct 48436 AAACCCATATCGGCAGAACGTTGATACATTTGACACGATAATTCGCCATTAACAGCGTAA 48495 Query 21117 AACTGACACAAAAC-GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCA 21175 ||||| ||| |||| |||||||||||| || |||||| | | || || ||||| Sbjct 48496 AACTG-CACTAAACAGTGACAAGGAGGTAGGGCCATCTTGGGTAAATCTAACGGATTCCA 48554 Query 21176 CGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACG 21235 ||||| | || || | | ||||| ||| | ||||| ||| | || | | Sbjct 48555 AGCGCATAAAATTATTCTTCTATCGTCGGGGTTATTTTTAATGGTATCAATGACATTTTG 48614 Query 21236 CAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAA 21295 ||| || || | || | ||| | ||||| | ||||||| || || || Sbjct 48615 CAGTTGATCGATGCCTTTGTTGGAGTAATCGGCGTGCATATCTTTGTACTCAGCTCCGAA 48674 Query 21296 ATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC 21334 |||||||| ||||| ||||| || || || |||||||| Sbjct 48675 GTGTCTCCATTGGAATCCGTAAACTGGACCGAGATCGCC 48713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427356905981280