Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq7792 140 3e-28 seq13914 109 5e-19 >seq7792 Length=27931 Score = 140 bits (154), Expect = 3e-28 Identities = 154/203 (76%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 13701 TTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 |||||| ||||| || ||||| ||||| | ||||| ||||| | ||||||||||||| Sbjct 19194 TTCGTTACTGAAA--GTCAATCCAGGCATTAGGCCTCGCTTTTTAAGCCAAAATATTGCA 19251 Query 13759 GCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCA 13818 || || ||| |||||||| || || || || |||||||||||||| | | ||||||| Sbjct 19252 GCAAAACTTCCTGAAAAGAAGATGCCTTCGACGGCAGCAAACGCTATGATCCTTTCTCCA 19311 Query 13819 AACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAA 13878 || | || ||||| | | ||||||||| ||||| || | ||| || |||| | || Sbjct 19312 AAAGTAGCATTTTTATCAGCTATCCATTTCAACGCCCAGTCTGCTTTCTTCTTAACACAA 19371 Query 13879 TCCATTGTTTCGATTGCATTGAA 13901 ||||||||| || |||||||| Sbjct 19372 GGCATTGTTTCAATAGCATTGAA 19394 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 13300 TTTAATAAAAACTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAA-AT 13358 ||||| ||| | ||||||||| | || ||| || |||| || | | ||| || Sbjct 18648 TTTAAAAAATATTAAAAATCAGCGTCCAATTTGAATTCATTCTCACCGGA-TGGGAACAT 18706 Query 13359 AACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAG 13418 ||| || |||| | |||||| | |||||| ||||| || || || |||||||| | || Sbjct 18707 AACTCCACTTTTCTTATATTCTCCAACTCTCTTTTCGAAGAAATTCGTTTTACCATTCAA 18766 Query 13419 TGATATATTTTCCATAAAATCGAATGGATT 13448 ||||||||||||||||||||||| || || Sbjct 18767 GGATATATTTTCCATAAAATCGAAAGGGTT 18796 >seq13914 Length=11729 Score = 109 bits (120), Expect = 5e-19 Identities = 161/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 |||||| || ||||| | ||||| |||||||| || |||| || || || | || || Sbjct 8204 AATGTAAGTGTCAATCAACAAGCTGTACATTTCTGAATGTACATTCTCAATTGTGATTTG 8263 Query 13989 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAA 14048 ||| || |||||| |||| ||||| | |||||| || | |||| | || | || Sbjct 8264 AAATCCGTAAAAAAATCTGGCTTCAGGAATTTGTACTTCTTGGAAAAAACGCTCGACTAA 8323 Query 14049 GTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA 14108 ||||||||||| ||||||||| || || |||||||| || | || ||| || | Sbjct 8324 ATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGGGAAATGAATTT 8383 Query 14109 TTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAA 14155 | |||||| || ||||||| |||||| |||||| |||||| Sbjct 8384 CTTCTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATCC-TAGAAA 8429 Score = 102 bits (112), Expect = 8e-17 Identities = 120/159 (75%), Gaps = 5/159 (3%) Strand=Plus/Plus Query 13293 TATAATATTTA-ATAAAAACTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT 13351 ||||| | ||| | ||||||||||||||| |||| ||| || |||| || | || Sbjct 7335 TATAAAAATTACAGAAAAACTAAAAATCAGCATCCAATTTGAATTCATTTTCACC--CGT 7392 Query 13352 TAGAA--ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTT 13409 | ||| || || || |||| | ||||| | |||||||| ||||| || || ||||| Sbjct 7393 TGGAAACATGACTCCACTTTTCTTGTATTCGCCTACTCTTTTCTCAAAGAAATTCGTTTT 7452 Query 13410 ACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATT 13448 ||| | || |||||||||||||||||||||||||| || Sbjct 7453 ACCGTTTAGAGATATATTTTCCATAAAATCGAATGGGTT 7491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478107902009040