Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq63578 131 1e-25
seq28572 95.1 9e-15
>seq63578
Length=26733
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| || || || | ||| |||||||| | ||| |||||||| | ||||||||||
Sbjct 11822 CCACCGCGAAGACGTAAGACCAAATGTAGGGTGGATTCCTTTTGGATATTGTAATCGCTT 11881
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
|| || || |||| ||||||||||| ||||| ||||| |||||||| || |||| ||
Sbjct 11882 AACGTGCGGCCGTCTTCCAATTGTTTACCGGCGAAAATTAATCGCTGCTGGTCGGGTGGA 11941
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| ||||||||| || ||| |||| || | | | ||| ||| | ||| ||
Sbjct 11942 ATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTCTCGATTGTATCGGATGGCTCTACT 12001
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | ||| |||||||| ||||| || ||||| || |||||||||||
Sbjct 12002 TCCAACGTGATAGTTTTACCGGTGAGCGTTTTTACGAAAATTTGCAT 12048
Score = 105 bits (116), Expect = 5e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| || | || || ||||| | || ||| || || | ||||| ||| |
Sbjct 12050 CCACCACGTAGACGCAAAACTAAATGCAGCGTAGACTCTTTCTGAATGTTGTAGTCGCTC 12109
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
|| ||||| | || || |||||||| ||||| ||||| |||| || || |||| ||
Sbjct 12110 AAAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATTAATCTTTGCTGGTCGGGTGGG 12169
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| ||||||||| || ||| |||| || | | | |||||| | |||||
Sbjct 12170 ATACCTTCTTTATCTTGGATTTTTGCTTTTACATTTTCGATTGTGTCAGATGGTTCGACT 12229
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110
|||| ||| ||||||||||| || || ||||| || ||||||||||||
Sbjct 12230 TCTAACGTGATAGTTTTTCCAGTGAGCGTTTTAACGAAAATTTGCATT 12277
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| || || || | ||| || ||||| | |||| || ||||| | ||| |||||| |
Sbjct 12278 CCACCTCGAAGACGTAAAACTAAATGAAGAGTGGATTCTTTTTGGATATTATAATCGCTC 12337
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
|| ||||| |||| ||||||||||| ||||| ||||| |||| ||| || |||| ||
Sbjct 12338 AAGGTACGACCGTCTTCCAATTGTTTACCGGCGAAAATTAATCTCTGCTGGTCGGGTGGG 12397
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| |||||||| || || |||| || | ||| || || | || ||
Sbjct 12398 ATGCCTTCTTTGTCTTGAATTTTGGCTTTCACGTTTTCAATAGTATCAGACGGTTCCACT 12457
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | || ||||||||||||||||| || | ||||||||||||
Sbjct 12458 TCCAAGGTGATAGTTTTTCCGGTTAGCGTAATTTGAAAAATTTGCAT 12504
Score = 95.1 bits (104), Expect = 9e-15
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| || || || | || |||||||| | || || ||||| | |||||| ||| |
Sbjct 12506 CCGCCGCGAAGACGTAGGACCAAATGAAGCGTCGATTCTTTTTGAATATTGTAGTCGCTC 12565
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
||||| || | || ||||||||||| ||||||||||| || || || || || | ||
Sbjct 12566 AATGTGCGGCCATCTTCCAATTGTTTACCGGCAAAAATTAACCGTTGCTGGTCAGGTGGG 12625
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| |||||||| || ||| ||||||| | | | || ||| | || ||
Sbjct 12626 ATTCCTTCTTTATCTTGAATCTTGGCTTTGACGTTTTCGATCGTATCGGATGGTTCAACT 12685
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112
|| | || || ||||||||||| |||||||| || || |||||||| ||
Sbjct 12686 TCCAAAGTAATGGTTTTTCCGGTAAGAGTTTTTACGAAGATTTGCATCTT 12735
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| | ||| | ||||| || | |||| || || || | || ||||| |
Sbjct 11594 CCACCACGTAATCTGAGTACCAAGTGAAGAGTGGATTCTTTCTGAATGTTATAATCACTC 11653
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| ||||| | || ||||| ||||| |||||||| |||||||| || || || | ||
Sbjct 11654 AGAGTACGGCCATCTTCCAACTGTTTACCGGCAAAGATCAATCGTTGCTGGTCTGGTGGT 11713
Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061
| |||||||| || |||| | ||||||| | ||| || ||| | || ||
Sbjct 11714 ATGCCTTCTTTATC-CTGAATTTTAGCTTTGACATTTTCAATGGTATCGGACGGTTCCAC 11772
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | ||||| |||||||| || || ||||| || |||||||||||
Sbjct 11773 CTCCAAGGTTATGGTTTTTCCAGTGAGCGTTTTAACGAAAATTTGCAT 11820
>seq28572
Length=14732
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
||||| | || || | ||| | ||| | ||| |||||||| | ||||||||||||
Sbjct 2061 CCTCCTCTCAATCGAAGCACGAGATGTAAAGTTGATTCCTTTTGAATATTGTAATCGGAG 2120
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| || || | || || | |||||||||||||||||| || || |||||||| | ||
Sbjct 2121 AGGGTTCGGCCATCTTCGAGTTGTTTGCCGGCAAAAATTAAACGTTGTTGATCTGGGGGA 2180
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| ||||| || || ||| | ||||| | | | ||||| | | ||| ||
Sbjct 2181 ATTCCTTCCTTATCTTGGATTTTAGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTACT 2240
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | || || ||||| || ||||| ||||| || || ||||||||
Sbjct 2241 TCGAGAGTGATGGTTTTACCCGTTAGGGTTTTAACGAAGATTTGCAT 2287
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941
||| ||||| |||| ||||||||||| | || ||| || || | ||||||||| ||
Sbjct 1604 GCCACCACGAAGTCGCAACACCAAATGCAGCGTCGACTCTTTCTGGATATTGTAATCCGA 1663
Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001
| || | | || || | || || ||||| ||||| || || || ||||||| ||
Sbjct 1664 AAGAGTTCTACCATCTTCAAGCTGCTTTCCGGCGAAAATTAAACGTTGCTGATCGGGAGG 1723
Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061
| |||||||| || |||| | ||||| | | | ||||||| || |||||
Sbjct 1724 GATTCCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCGCTAGGTTCGAC 1783
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | || || ||||| ||||| | || || || || ||||||||
Sbjct 1784 TTCGAGAGTAATCGTTTTACCGGTCAAGGTCTTAACGAAGATTTGCAT 1831
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380995970534388
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |