Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq13914 141 1e-28
seq7792 141 1e-28
seq19381 129 8e-25
seq59517 123 3e-23
>seq13914
Length=11729
Score = 141 bits (156), Expect = 1e-28
Identities = 157/209 (75%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 42101 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATA 42160
|||||||| ||| || || ||||| ||||||||||| | |||||||||||||||||
Sbjct 7900 ATTAATTCATTGCTGAAAGTCAGTCCAGGCATTAGGCCCCTTTTTTTAAGCCAAAATATC 7959
Query 42161 GACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCT 42220
| ||||| |||||||||||| || ||||| || || ||||| || || | ||| |||
Sbjct 7960 GCAGCAAAACTTCCAGAAAAGAAAATACCTTCGACAGCAGCAAAAGCTATGATTCTTTCT 8019
Query 42221 CCATAA---CCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 42277
||| || || |||||| ||||||||| ||||| || || || | || |||
Sbjct 8020 CCAAAAGTCGCGTTTTTGTCATTTATCCACTTCAACGCCCAGTCAGCTTTTCTCTTAACA 8079
Query 42278 CAAGGCATCGTTTCTATGGCATTAAAGAG 42306
|| ||||| ||||| |||||||| || ||
Sbjct 8080 CACGGCATGGTTTCAATGGCATTGAATAG 8108
Score = 118 bits (130), Expect = 1e-21
Identities = 161/225 (72%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384
|||||||| || || || ||||| | || |||||||||||||| | || ||||| |
Sbjct 8198 ATCTTTAATGTAAGTGTCAATCAACAAGCTGTACATTTCTGAATGTACATTCTCAATTGT 8257
Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444
|| ||||||||||| ||| ||||||| || | || ||||||||| |||| || ||
Sbjct 8258 GATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATTTGTACTTCTTGGAAAAAACGCTC 8317
Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504
|||||||||| || || || || ||| ||| || ||||| || || || || ||
Sbjct 8318 GACTAAATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGGGAAAT 8377
Query 42505 AAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATC 42549
|| | || || || ||| | | ||| | |||||| ||| |||
Sbjct 8378 GAATTTCTTCTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATC 8422
>seq7792
Length=27931
Score = 141 bits (156), Expect = 1e-28
Identities = 157/209 (75%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 42101 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATA 42160
||||||||||| || || | ||| ||||||||||| ||||||||||||||||||||
Sbjct 19189 ATTAATTCGTTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTTTAAGCCAAAATATT 19248
Query 42161 GACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCT 42220
| ||||| ||| ||||||||||| ||||| || || ||||| || || | || |||
Sbjct 19249 GCAGCAAAACTTCCTGAAAAGAAGATGCCTTCGACGGCAGCAAACGCTATGATCCTTTCT 19308
Query 42221 CCATAACCGGCA---CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 42277
||| || ||| | ||| |||||| || ||||| || || ||||| || |||
Sbjct 19309 CCAAAAGTAGCATTTTTATCAGCTATCCATTTCAACGCCCAGTCTGCTTTCTTCTTAACA 19368
Query 42278 CAAGGCATCGTTTCTATGGCATTAAAGAG 42306
|||||||| ||||| || ||||| || ||
Sbjct 19369 CAAGGCATTGTTTCAATAGCATTGAACAG 19397
Score = 120 bits (132), Expect = 4e-22
Identities = 131/174 (75%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 42316 TTCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTT 42375
|||| || ||| || || ||||| || ||||| | ||| |||||||||||||||| ||
Sbjct 19476 TTCAGTAGGATCCTTGACGTATGTGTCTATCAATAAACTGTACATTTCTGAATGAACATT 19535
Query 42376 TTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACA 42435
|| |||| ||||||||||||||||| |||| || |||| | || |||||| | |
Sbjct 19536 CTCTATGGTGATCTGAAATCCGTAGAAGAATCTAGCTTCGGGGATTTGAACTTCTTGAAA 19595
Query 42436 AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGC 42489
|| || || |||||||||| ||||| || |||||| || || ||||| ||
Sbjct 19596 GAAGCGCTCGACTAAATTTTCATTCACGATACCGTCAGATGCGGCGAAAAATGC 19649
Score = 91.5 bits (100), Expect = 2e-13
Identities = 80/100 (80%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 42561 CTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCAT 42620
|||||||||| | ||||||||||| ||||||||||||||| |||| ||| |||||||
Sbjct 19789 CTACTTCTTCAGCTGTCCAAAATGAAGCTTCTGCCTTTTTAAACATGGCCCAAATATCAT 19848
Query 42621 GATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGG 42660
|||| |||||| | || ||||||||| ||||| ||
Sbjct 19849 CGTATTTAATTGGCATTATTACAAATCTACGAGGATTAGG 19888
>seq19381
Length=19756
Score = 129 bits (142), Expect = 8e-25
Identities = 208/299 (70%), Gaps = 0/299 (0%)
Strand=Plus/Minus
Query 71971 AATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTC 72030
||||| ||||||| | | ||||||||||| ||| | | |||| | | || | | ||
Sbjct 9210 AATCCGGGACATTGACTGGGACACATCAAACTCCATTTTTCATCTTTTTCGACCCTTCTC 9151
Query 72031 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTT 72090
|| || || || ||||| | || ||||| ||| || | | | ||| || ||
Sbjct 9150 ATGAATTCGTCGGGGATCCACATTGCGTAAAATAAATCCCTAGCGCGAGACTCTTCTTTA 9091
Query 72091 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 72150
|| | ||| ||| || || | || | | |||||| | |||||| |||||||||||
Sbjct 9090 CCAGAATTTTTTCGCAGCTCTAAAAATTCAAAAATATCCGCATGCCAAGGTTCCAAGTAA 9031
Query 72151 ATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 72210
|| || | | | ||||| | |||||| ||||| || || | |||||| || ||||||||
Sbjct 9030 ATAGCAAAAGCACCCGGTCTTTTGTTGCCTCCTTGGTCCACGTATCTGGCTGTGTTATTG 8971
Query 72211 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 72269
|| || | | ||| ||||| | |||||| ||| | || || || || | |||||||||
Sbjct 8970 TATACGCGAAGCATCGGAATTAGACCATTTGATACGCCGTTTGTTCCAGCGATATAGCT 8912
Score = 109 bits (120), Expect = 7e-19
Identities = 137/186 (74%), Gaps = 4/186 (2%)
Strand=Plus/Minus
Query 72422 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG--ACAGTAGATTGTA 72479
||||||| ||||||||||||||||| || ||||| || |||||| ||| || ||| ||
Sbjct 8694 CCGCATTGAATAAGGTAGGAGAAGCATGAGTAAA--ATATTTCAGGGACATTAAATTATA 8637
Query 72480 CGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACAT 72539
|| |||||| | || || ||||| || || || || || || ||||| |||||
Sbjct 8636 GGTTTCAATAACAGAGTCGATATCTTCGCCGTGAATACCAACGGCAACTCGCATCAACAT 8577
Query 72540 ATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGT 72599
||||| || | ||| || || || || |||||||| | ||||||||||||| |||
Sbjct 8576 GTGCTGTGGACGTTCGACAATACGATTGTTGATTTTCAATAGATAGGATTTTTCCAGAGT 8517
Query 72600 TTTAAA 72605
| |||
Sbjct 8516 CTGAAA 8511
>seq59517
Length=19559
Score = 123 bits (136), Expect = 3e-23
Identities = 139/186 (75%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201
||| ||||||||||||||||| |||| | ||| || || || ||||| ||||| |
Sbjct 14730 TACCTGAAATTCTCCAGACAAGACTCGTCTAGTATACATGTTTGAAGTATAAGGTTCGAA 14671
Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261
|| ||||||||||| |||||||||||||| || || || |||||||| || | | |||
Sbjct 14670 AGATTCATTATTTCCTAAAATTTGAGCAGTGGAAGCGGTAGGCATAGGAGCAAGAAGTAG 14611
Query 71262 ACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATC 71321
| |||||||| || | | | ||||| ||||||| ||| ||||| ||| | |||
Sbjct 14610 AGAATTTCTAACGCCGTATTGTTTAATTTTTTCTTTTAACGATGTCCAATCCCATAAATC 14551
Query 71322 CGATGG 71327
|||||
Sbjct 14550 AGATGG 14545
Score = 93.3 bits (102), Expect = 6e-14
Identities = 126/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 72424 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTC 72483
||| | || | |||||| |||||||| || || || | || || | | || || ||
Sbjct 13019 GCACTGAAAAGGGTAGGCGAAGCGTGAGTGAAATATCTCTCCGATAACAAGTTATAAGTT 12960
Query 72484 TCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGC 72543
||||| |||| || ||||| ||| |||||||| || || ||||| ||||||||
Sbjct 12959 TCAATCGCTGCGTCGATATCTTCAGCATGAATTCCTACAGCAACTCGCATCAACATATGT 12900
Query 72544 TGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGT 72599
|| || | ||| || | || ||||||||||| || || ||||||||||||||
Sbjct 12899 TGTGGGCGTTCTACAACTTTTCCGTTTATTTTCAATAAATACGATTTTTCCAAAGT 12844
Score = 91.5 bits (100), Expect = 2e-13
Identities = 110/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 71724 TACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGT 71783
|||||||| || | | ||||| | |||||||| || | |||||||| || || ||
Sbjct 13922 TACCTCATCAGGAGCACTATATTCGACGATTTCAGTACACAAATTACTACTTTTAATAGT 13863
Query 71784 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGT 71843
|||||||||||| ||||| ||| | ||||| ||||| || || | || | || ||
Sbjct 13862 TCCTAAATTTTGATGATTGGATTTTCTATTACAGGCATCTTTGTACAACATGTAAGGTGT 13803
Query 71844 ACCAGTTTCAATCTGAGATTCTATAATCGC 71873
|| |||||||| ||||| |||| ||| ||
Sbjct 13802 TCCTGTTTCAATTTGAGAGTCTAAAATTGC 13773
Score = 87.8 bits (96), Expect = 2e-12
Identities = 123/170 (72%), Gaps = 2/170 (1%)
Strand=Plus/Minus
Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927
|||| ||||| |||||||| || | | |||||| | |||| || ||||| ||||
Sbjct 15144 TCCAGCCGTAGAAATGCATCGAAGTCAAAGTCGAATAGTTTGGATTCGCCATGTGTATAT 15085
Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987
| | || |||||| ||||| ||||| | || ||||||||||| | || || |
Sbjct 15084 TTAAACTTTGCGATTGATCAATGAAAGCTCCACGATCGGCAGCCATTTTCAAGACGGTTT 15025
Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 71036
||||| ||||||||| | ||||||||| | ||| ||| | ||| |||||
Sbjct 15024 TTTGTTTAATTTCCCATACAGTTTTATACAGCTC-CTTCAAATCATCTGG 14976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670464822553360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |