Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq54470 113 7e-20
seq19381 107 3e-18
seq7792 102 1e-16
>seq54470
Length=54847
Score = 113 bits (124), Expect = 7e-20
Identities = 230/339 (68%), Gaps = 2/339 (1%)
Strand=Plus/Minus
Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126
|||||||| || ||||| ||||||||||| ||||| |||| || | |||| |||
Sbjct 48713 GGCGATCTCGGTCCAGTTTACGGATTCCAATGGAGACACTTCGGAGCTGAGTACAAAGAT 48654
Query 70127 -TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCT 70185
||| | | || || || | || | |||||| |||| | ||||||| || |
Sbjct 48653 ATGCACGCC-GATTACTCCAACAAAGGCATCGATCAACTGCAAAATGTCATTGATACCAT 48595
Query 70186 CAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCA 70245
|| | || || ||||| || || | | ||| | |||||||| |||||| |
Sbjct 48594 TAAAAATAACCCCGACGATAGAAGAATAATTTTATGCGCTTGGAATCCGTTAGATTTACC 48535
Query 70246 CCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCAAATT 70305
| | ||||| ||||| || ||||||||||| | ||||||||| | ||||| ||||
Sbjct 48534 CAAGATGGCCCTACCTCCTTGTCACTGTTTAGTGCAGTTTTACGCTGTTAATGGCGAATT 48475
Query 70306 GTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGC 70365
|| || ||||||||| | |||||| ||||| | || ||||| ||||| || ||
Sbjct 48474 ATCGTGTCAAATGTATCAACGTTCTGCCGATATGGGTTTAGGAGTACCTTTTAATATCGC 48415
Query 70366 AAGCTATTCTATGTTGACGCACATGATTGCTCACATTAC 70404
|| || || | | || ||||||| || || ||||
Sbjct 48414 CAGTTACTCCCTACTCACTTACATGATCGCACATGTTAC 48376
>seq19381
Length=19756
Score = 107 bits (118), Expect = 3e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCAC 96864
|||||||||| | | ||| ||| | || ||||| | | |||||| || | ||
Sbjct 8926 AACAAACGGCGTATCAAATGGTCTAATTCCGATGCTTCGCGTATACAATAACACAGCCA- 8984
Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924
||||||| || || ||||| ||| | || || ||| | || | |||||||||||||
Sbjct 8985 GATACGTGGACCAAGGAGGCAACAAAAGACCGGGTGCTTTTGCTATTTACTTGGAACCTT 9044
Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984
|||| ||||| ||||||| ||| | ||| |||| ||||| ||||| |||||| | |
Sbjct 9045 GGCATGCGGATATTTTTGAATTTTTAGAGCTGCGAAAAAATTCTGGTAAAGAAGAGTCTC 9104
Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGA 97032
| || ||||| || ||||| ||| | ||| | || || |||||||
Sbjct 9105 GCGCTAGGGATTTATTTTACGCAATGTGGATCCCCGACGAATTCATGA 9152
>seq7792
Length=27931
Score = 102 bits (112), Expect = 1e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492
|| || || ||||| || |||||||||||||| || |||||||| || || ||||||||
Sbjct 19295 GCGTTTGCTGCCGTCGAAGGCATCTTCTTTTCAGGAAGTTTTGCTGCAATATTTTGGCTT 19236
Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGA 125551
|| ||||| || || ||||| ||| |||| ||||||||| || ||||| | |||||
Sbjct 19235 AAAAAGCGAGGCCTAATGCCTGGATTGACTTTCAGTAACGAATTAATATCAAGGGACGA 19177
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740314565189360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |