Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq54470 113 7e-20 seq19381 107 3e-18 seq7792 102 1e-16 >seq54470 Length=54847 Score = 113 bits (124), Expect = 7e-20 Identities = 230/339 (68%), Gaps = 2/339 (1%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 |||||||| || ||||| ||||||||||| ||||| |||| || | |||| ||| Sbjct 48713 GGCGATCTCGGTCCAGTTTACGGATTCCAATGGAGACACTTCGGAGCTGAGTACAAAGAT 48654 Query 70127 -TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCT 70185 ||| | | || || || | || | |||||| |||| | ||||||| || | Sbjct 48653 ATGCACGCC-GATTACTCCAACAAAGGCATCGATCAACTGCAAAATGTCATTGATACCAT 48595 Query 70186 CAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCA 70245 || | || || ||||| || || | | ||| | |||||||| |||||| | Sbjct 48594 TAAAAATAACCCCGACGATAGAAGAATAATTTTATGCGCTTGGAATCCGTTAGATTTACC 48535 Query 70246 CCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCAAATT 70305 | | ||||| ||||| || ||||||||||| | ||||||||| | ||||| |||| Sbjct 48534 CAAGATGGCCCTACCTCCTTGTCACTGTTTAGTGCAGTTTTACGCTGTTAATGGCGAATT 48475 Query 70306 GTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGC 70365 || || ||||||||| | |||||| ||||| | || ||||| ||||| || || Sbjct 48474 ATCGTGTCAAATGTATCAACGTTCTGCCGATATGGGTTTAGGAGTACCTTTTAATATCGC 48415 Query 70366 AAGCTATTCTATGTTGACGCACATGATTGCTCACATTAC 70404 || || || | | || ||||||| || || |||| Sbjct 48414 CAGTTACTCCCTACTCACTTACATGATCGCACATGTTAC 48376 >seq19381 Length=19756 Score = 107 bits (118), Expect = 3e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCAC 96864 |||||||||| | | ||| ||| | || ||||| | | |||||| || | || Sbjct 8926 AACAAACGGCGTATCAAATGGTCTAATTCCGATGCTTCGCGTATACAATAACACAGCCA- 8984 Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 ||||||| || || ||||| ||| | || || ||| | || | ||||||||||||| Sbjct 8985 GATACGTGGACCAAGGAGGCAACAAAAGACCGGGTGCTTTTGCTATTTACTTGGAACCTT 9044 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 |||| ||||| ||||||| ||| | ||| |||| ||||| ||||| |||||| | | Sbjct 9045 GGCATGCGGATATTTTTGAATTTTTAGAGCTGCGAAAAAATTCTGGTAAAGAAGAGTCTC 9104 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGA 97032 | || ||||| || ||||| ||| | ||| | || || ||||||| Sbjct 9105 GCGCTAGGGATTTATTTTACGCAATGTGGATCCCCGACGAATTCATGA 9152 >seq7792 Length=27931 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || || || ||||| || |||||||||||||| || |||||||| || || |||||||| Sbjct 19295 GCGTTTGCTGCCGTCGAAGGCATCTTCTTTTCAGGAAGTTTTGCTGCAATATTTTGGCTT 19236 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGA 125551 || ||||| || || ||||| ||| |||| ||||||||| || ||||| | ||||| Sbjct 19235 AAAAAGCGAGGCCTAATGCCTGGATTGACTTTCAGTAACGAATTAATATCAAGGGACGA 19177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740314565189360