Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq28572 98.7 8e-16
>seq28572
Length=14732
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| || || ||||||||||| ||||||| | ||| || |||| || || ||||| ||
Sbjct 1863 GTCGATTCTTTTTGAATATTATAATCCGAGAGAGTTCTGCCGTCTTCGAGTTGTTTTCCG 1922
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
|| |||| || | ||||| || || | ||||| || || ||||| ||
Sbjct 1923 GCGAAAATGAGACGTTGCTGGTCTGGAGGAATTCCCTCCTTATCTTGGATTTTGGCCTTG 1982
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | ||| || || | |||||| ||||| ||| || |||||||||||||| |||
Sbjct 1983 ACATTTTCGATTGTGTCACTAGGCTCGACTTCGAGGGTGATTGTTTTACCTGTTAAGGTT 2042
Query 19025 TTGACAAAAATTTGCAT 19041
||||| |||||||||||
Sbjct 2043 TTGACGAAAATTTGCAT 2059
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898
||||| || || || ||||| || || || |||| | ||| | | || || || |||
Sbjct 2313 TGCAATGTCGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTTCCATCTTCGAGTTGT 2372
Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958
||||| ||| | ||||| | |||||||| ||| | ||||| || || ||||||
Sbjct 2373 TTACCAGCAAAGATAAGACGTTGCTGATCAGGGGGAATTCCCTCCTTATCTTGAATTTTG 2432
Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018
|| || | ||| || || | |||||| |||| || || |||||||| |||
Sbjct 2433 GCCTTGACATTTTCGATCGTGTCACTAGGCTCGACCTCGAGTGTGATAGTTTTACCAGTT 2492
Query 19019 AAAGTTTTGACAAAAATTTGCATT 19042
|| || ||||| ||||||||||||
Sbjct 2493 AAGGTCTTGACGAAAATTTGCATT 2516
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
|||||||||| | | | |||| || || || || || ||||| || |||||||| |
Sbjct 2515 TTCCTCCTCGGAGACGGAGAACCAAATGTAATGTCGATTCTTTTTGGATGTTGTAATCGG 2574
Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932
| ||| | |||| || || |||||||| || |||| | | || ||||| ||
Sbjct 2575 AAAGAGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGTTGATCAGGGG 2634
Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992
| | ||||| || || |||||| || || | ||| || || | |||||
Sbjct 2635 GAATTCCCTCCTTATCCTGAATTTTAGCCTTGACATTTTCGATGGTGTCACTGGGCTCTA 2694
Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
||||| || ||||||||||| ||||| |||||||| ||||| |||||
Sbjct 2695 CTTCGAGAGTGATGGTTTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 2743
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414166641214084
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |