Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq9614 425 2e-114 seq19165 360 7e-95 >seq9614 Length=652 Score = 425 bits (470), Expect = 2e-114 Identities = 299/340 (88%), Gaps = 1/340 (0%) Strand=Plus/Minus Query 18060 ATCGCGTCGAACTGATTAACCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCGAACC 18119 |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 652 ATCGCGTCGAACTGATTAGCCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCAAACC 593 Query 18120 ATAACCGCCATCGCTGGACTGTCGAAGAATGCAGGGCGATCAAGGCGAAGTATCAGCAGA 18179 |||||||||||||||||||| ||||||| |||| |||||||||||| |||| || |||| Sbjct 592 ATAACCGCCATCGCTGGACTATCGAAGAGTGCAAGGCGATCAAGGCAGAGTACCAACAGA 533 Query 18180 AACTTAAAGACCTGCGAAACAGCAGAAGTGAGGCCGCATGACGTTCACAGTAAAAACCAT 18239 |||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 532 AACTCAAAGACCTGCGAAATAGCAGAAGTGAGGCCGCATGACGTTCTCAGTAAAAACCAT 473 Query 18240 TCCTGACATGCTCCTTGAGGCATATGGAAATCAGACCGAGGTAGCCCGAATACTGAACTG 18299 ||| ||||||||| |||| |||| ||||||||||| || ||||| || | |||||| || Sbjct 472 TCCAGACATGCTCGTTGAAACATACGGAAATCAGACAGAAGTAGCACGCAGACTGAAATG 413 Query 18300 CAATCGTGCCACAGTCAGAAAATACATTGGCGATAAAGAAGGGAAAAAGCACGCCGTCGT 18359 | ||| | || |||||||||||| ||| |||||||| ||||||| ||||||| |||| Sbjct 412 TAGTCGCGGTACGGTCAGAAAATACGTTGATGATAAAGACGGGAAAATGCACGCCATCGT 353 Query 18360 CAATGGCGTCCTTATGGTTCATCGCGGATGGGGT-AAAGA 18398 ||| | ||| || |||||||||||||||||| || ||||| Sbjct 352 CAACGACGTTCTCATGGTTCATCGCGGATGGAGTGAAAGA 313 >seq19165 Length=1007 Score = 360 bits (398), Expect = 7e-95 Identities = 226/244 (93%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 3628 TTGCTTTCTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 3687 |||| | ||||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 252 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 193 Query 3688 CTGTTTACTGATAAGCTCCAGCTCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 3747 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 192 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 133 Query 3748 TGCCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTTGCGGATAC 3807 ||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 132 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 73 Query 3808 AGTCTGGTAGTTCAGGCGACGCATTTTTATTGCTGTATTGCGCTGTAATTCTTCAATTTC 3867 || ||||| ||||||||| ||||||||||||||||| ||||||||||||||||| ||||| Sbjct 72 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTC 13 Query 3868 TGAT 3871 |||| Sbjct 12 TGAT 9 Score = 176 bits (194), Expect = 2e-39 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 3320 TGCTGCTTCAAGCTCAACACGCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 3379 ||||| |||||||||||||||||| ||||| || || |||||||| |||||||||||||| Sbjct 428 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 369 Query 3380 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCAC 3436 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 368 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185077559160144