Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_004813.1
Length=57930
Score E
Sequences producing significant alignments: (Bits) Value
seq9614 425 2e-114
seq19165 360 7e-95
>seq9614
Length=652
Score = 425 bits (470), Expect = 2e-114
Identities = 299/340 (88%), Gaps = 1/340 (0%)
Strand=Plus/Minus
Query 18060 ATCGCGTCGAACTGATTAACCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCGAACC 18119
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 652 ATCGCGTCGAACTGATTAGCCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCAAACC 593
Query 18120 ATAACCGCCATCGCTGGACTGTCGAAGAATGCAGGGCGATCAAGGCGAAGTATCAGCAGA 18179
|||||||||||||||||||| ||||||| |||| |||||||||||| |||| || ||||
Sbjct 592 ATAACCGCCATCGCTGGACTATCGAAGAGTGCAAGGCGATCAAGGCAGAGTACCAACAGA 533
Query 18180 AACTTAAAGACCTGCGAAACAGCAGAAGTGAGGCCGCATGACGTTCACAGTAAAAACCAT 18239
|||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 532 AACTCAAAGACCTGCGAAATAGCAGAAGTGAGGCCGCATGACGTTCTCAGTAAAAACCAT 473
Query 18240 TCCTGACATGCTCCTTGAGGCATATGGAAATCAGACCGAGGTAGCCCGAATACTGAACTG 18299
||| ||||||||| |||| |||| ||||||||||| || ||||| || | |||||| ||
Sbjct 472 TCCAGACATGCTCGTTGAAACATACGGAAATCAGACAGAAGTAGCACGCAGACTGAAATG 413
Query 18300 CAATCGTGCCACAGTCAGAAAATACATTGGCGATAAAGAAGGGAAAAAGCACGCCGTCGT 18359
| ||| | || |||||||||||| ||| |||||||| ||||||| ||||||| ||||
Sbjct 412 TAGTCGCGGTACGGTCAGAAAATACGTTGATGATAAAGACGGGAAAATGCACGCCATCGT 353
Query 18360 CAATGGCGTCCTTATGGTTCATCGCGGATGGGGT-AAAGA 18398
||| | ||| || |||||||||||||||||| || |||||
Sbjct 352 CAACGACGTTCTCATGGTTCATCGCGGATGGAGTGAAAGA 313
>seq19165
Length=1007
Score = 360 bits (398), Expect = 7e-95
Identities = 226/244 (93%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 3628 TTGCTTTCTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 3687
|||| | ||||||| |||||||||||||||| | |||||||||||||||||||||||||
Sbjct 252 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 193
Query 3688 CTGTTTACTGATAAGCTCCAGCTCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 3747
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 192 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 133
Query 3748 TGCCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTTGCGGATAC 3807
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 132 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 73
Query 3808 AGTCTGGTAGTTCAGGCGACGCATTTTTATTGCTGTATTGCGCTGTAATTCTTCAATTTC 3867
|| ||||| ||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 72 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTC 13
Query 3868 TGAT 3871
||||
Sbjct 12 TGAT 9
Score = 176 bits (194), Expect = 2e-39
Identities = 109/117 (93%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 3320 TGCTGCTTCAAGCTCAACACGCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 3379
||||| |||||||||||||||||| ||||| || || |||||||| ||||||||||||||
Sbjct 428 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 369
Query 3380 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCAC 3436
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 368 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 312
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 185077559160144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |