Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq63578 134 9e-27 seq28572 111 1e-19 seq52934 100 2e-16 >seq63578 Length=26733 Score = 134 bits (148), Expect = 9e-27 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||| | ||||| |||||||| |||||||| || ||| || | || ||| Sbjct 12524 ACCAAATGAAGCGTCGATTCTTTTTGAATATTGTAGTCGCTCAATGTGCGGCCATCTTCC 12583 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| || || ||| ||||| ||||||||||| | || || |||||||| || | Sbjct 12584 AATTGTTTACCGGCAAAAATTAACCGTTGCTGGTCAGGTGGGATTCCTTCTTTATCTTGA 12643 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| ||| || ||| ||||| ||| |||| ||| |||| ||| || |||||| Sbjct 12644 ATCTTGGCTTTGACGTTTTCGATCGTATCGGATGGTTCAACTTCCAAAGTAATGGTTTTT 12703 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || ||||||||||||||||| |||||||| || Sbjct 12704 CCGGTAAGAGTTTTTACGAAGATTTGCATCTT 12735 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || || ||||| || || || |||||| || | | | || ||| Sbjct 11612 ACCAAGTGAAGAGTGGATTCTTTCTGAATGTTATAATCACTCAGAGTACGGCCATCTTCC 11671 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 || || || || ||| || || ||||||||||| | |||||||||||||| || | Sbjct 11672 AACTGTTTACCGGCAAAGATCAATCGTTGCTGGTCTGGTGGTATGCCTTCTTTATCCTGA 11731 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || ||| || ||| ||| || ||| |||| || |||| ||||| |||||| Sbjct 11732 ATTTTAGCTTTGACATTTTCAATGGTATCGGACGGTTCCACCTCCAAGGTTATGGTTTTT 11791 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || ||||| |||||||||||||| Sbjct 11792 CCAGTGAGCGTTTTAACGAAAATTTGCAT 11820 Score = 91.5 bits (100), Expect = 9e-14 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || || |||||||| | || || || ||||| ||||||||||| || || | | Sbjct 11834 CGTAAGACCAAATGTAGGGTGGATTCCTTTTGGATATTGTAATCGCTTAACGTGCGGCCG 11893 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| || || || ||||| || |||||||| | || || |||||||| Sbjct 11894 TCTTCCAATTGTTTACCGGCGAAAATTAATCGCTGCTGGTCGGGTGGAATACCTTCTTTG 11953 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| ||| || | | || || ||| || | || |||| || || Sbjct 11954 TCTTGAATCTTGGCTTTAACATTCTCGATTGTATCGGATGGCTCTACTTCCAACGTGATA 12013 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || || |||||||||||||||||||| Sbjct 12014 GTTTTACCGGTGAGCGTTTTTACGAAAATTTGCAT 12048 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || | || ||||| || ||||||| || |||||||| || || ||||| || Sbjct 12049 ACCACCACGTAGACGCAAAACTAAATGCAGCGTAGACTCTTTCTGAATGTTGTAGTCGCT 12108 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 |||| | | || || ||||| || || || ||||| | ||||||||| | || Sbjct 12109 CAAAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATTAATCTTTGCTGGTCGGGTGG 12168 Query 33262 TATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || |||||||| || | | | || |||||| ||| || ||||| |||| Sbjct 12169 GATACCTTCTTTATCTTGGATTTTTGC---TTTTACATTTTCGATTGTGTCAGATGGTTC 12225 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | || || |||||||| || || ||||| |||||||||||||| Sbjct 12226 GACTTCTAACGTGATAGTTTTTCCAGTGAGCGTTTTAACGAAAATTTGCAT 12276 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| |||||||| | || ||||| || || ||||| ||||| || || | Sbjct 11378 CGCAAAACCAAATGAAGGGTGGACTCCTTCTGAATATTATAATCGCTTAACGTGCGGCCA 11437 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||||||||||||| || || || | |||||||| | || || |||||||| Sbjct 11438 TCTTCCAATTGCTTTCCAGCGAAAATCAATCTCTGCTGGTCAGGCGGGATACCTTCTTTA 11497 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || | | || || ||| |||| || |||| || || Sbjct 11498 TCTTGAATTTTAGCTTTCACGTTCTCGATGGTATCGGACGGTTCGACTTCCAAGGTAATA 11557 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || | |||||| |||||||||||||| Sbjct 11558 GTCTTGCCGGTTAAAGTTTTCACGAAAATTTGCAT 11592 >seq28572 Length=14732 Score = 111 bits (122), Expect = 1e-19 Identities = 159/222 (72%), Gaps = 14/222 (6%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTT-- 33212 |||||||||||||||| ||||||||||| || ||||||||||| || | ||||| Sbjct 1617 CGCAACACCAAATGCAGCGTCGACTCTTTCTGGATATTGTAATCCGAAA----GAGTTCT 1672 Query 33213 --GGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 || || | |||||||| || |||||||||||||| || | || || ||||| Sbjct 1673 ACCATCTTCAAGCTGCTTTCCGGCGAAAATTAAACGTTGCTGATCGGGAGGGATTCCTTC 1732 Query 33271 TTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAG 33327 ||| || | | | ||| || || ||| || |||||| | |||| || || || Sbjct 1733 TTTGTCTTGGATCTTAGCC---TTGACGTTTTCGATGGTGTCGCTAGGTTCGACTTCGAG 1789 Query 33328 AGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| |||||||| || || | || || ||||| |||||||| Sbjct 1790 AGTAATCGTTTTACCGGTCAAGGTCTTAACGAAGATTTGCAT 1831 Score = 102 bits (112), Expect = 5e-17 Identities = 166/238 (70%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || || | |||||||| || ||||| || ||||| ||||||||||| || Sbjct 3200 ACCACCTCTCAATCGAAGAACCAAATGTAAAGTCGATTCCTTTTGGATATTGTAATCGGA 3259 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | ||| || | |||||||||| || || | |||||| || || | || Sbjct 3260 AAGCGTTCGGCCGTCTTCGAGTTGCTTTCCAGCGAAGATCAGACGTTGTTGATCAGGAGG 3319 Query 33262 TATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || ||||| || || || ||||| || || ||| ||||| || | |||| Sbjct 3320 AATACCTTCCTTATCTTGAATTTTCGCC---TTGACGTTTTCGATCGTATCACTCGGTTC 3376 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTATG 33376 ||| || || || || ||||| || || | ||||||||||| || ||||| ||| || Sbjct 3377 AACTTCGAGGGTGATGGTTTTACCAGTCAACGTTTTTACGAAGATCTGCATTTTTCTG 3434 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/235 (69%), Gaps = 14/235 (6%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || || | ||| | ||| || || || || ||||| ||||||||||| || Sbjct 2060 ACCTCCTCTCAATCGAAGCACGAGATGTAAAGTTGATTCCTTTTGAATATTGTAATCGGA 2119 Query 33202 CAAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 | | ||| | || || | ||| || || ||| ||||||||||| || || | Sbjct 2120 GA----GGGTTCGGCCATCTTCGAGTTGTTTGCCGGCAAAAATTAAACGTTGTTGATCTG 2175 Query 33258 TGGGTATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGG 33314 ||| || ||||| || || | | | ||| || || ||| || ||||| ||| Sbjct 2176 GGGGAATTCCTTCCTTATCTTGGATTTTAGCC---TTGACGTTTTCGATGGTGTCACTGG 2232 Query 33315 GTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | | || || ||||| || ||||| ||||| || ||||| ||||| |||||||| Sbjct 2233 GCTCTACTTCGAGAGTGATGGTTTTACCCGTTAGGGTTTTAACGAAGATTTGCAT 2287 Score = 91.5 bits (100), Expect = 9e-14 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||| |||||||| |||||||| || |||||||| || | | | | ||| || Sbjct 2535 ACCAAATGTAATGTCGATTCTTTTTGGATGTTGTAATCGGAAAGAGTTCGGCCGTCTTCG 2594 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||| || || || ||||||||||| || || | ||| || || || || || | Sbjct 2595 AGTTGTTTACCGGCGAAAATTAAACGTTGTTGATCAGGGGGAATTCCCTCCTTATCCTGA 2654 Query 33281 A---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| || ||||| |||| | || || ||||| || ||| Sbjct 2655 ATTTTAGCC---TTGACATTTTCGATGGTGTCACTGGGCTCTACTTCGAGAGTGATGGTT 2711 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || | ||||| |||||||| ||||| Sbjct 2712 TTACCAGTTAAGGTTTTGACGAAAATCTGCAT 2743 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | || | |||||||| || || || |||||||| || || || || || Sbjct 2973 CCTCCTCTGAGACGGAGAACCAAATGTAAAGTAGATTCTTTTTGGATGTTATAGTCCGA- 3031 Query 33203 AAATTGAGTTGG--TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 || || | || || | ||| || || || || | |||||||||||||| | Sbjct 3032 -AAGTGTTCTACCATCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAG 3090 Query 33261 GTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317 | ||||||||||| || ||| |||| | || ||| |||||||||| | || | Sbjct 3091 GGATGCCTTCTTTATCCTGAATTTTTGCCT---TGACGTTTTCAATCGTGTCGCTAGGCT 3147 Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || ||||| || || | ||||||||||| || ||||| Sbjct 3148 CGACTTCGAGAGTGATGGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 3199 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || || | || |||||||||||||| |||||||| || || || || || Sbjct 2288 ACCACCTCTCAATCGGAGAACTAAATGCAATGTCGATTCTTTTTGGATGTTATAGTCCGA 2347 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | || || | ||| || ||| ||| || | ||||||||| || | ||| Sbjct 2348 AAGAGTTCTTCCATCTTCGAGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCAGGGGG 2407 Query 33262 TATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || || || || || || | ||| || || ||| |||||||| | || | Sbjct 2408 AATTCCCTCCTTATCTTGAATTTTGGCC---TTGACATTTTCGATCGTGTCACTAGGCTC 2464 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || ||||| || || | || || |||||||||||||| Sbjct 2465 GACCTCGAGTGTGATAGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 2515 >seq52934 Length=6696 Score = 100 bits (110), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 8/194 (4%) Strand=Plus/Plus Query 33180 CTTTTTGTATATTGTAATCAGACAAATTGAGTTGG----TCATCCAATTGCTTTCCACTA 33235 ||||||| ||||||||||| || | ||||| || |||||||||||||| Sbjct 3966 CTTTTTGGATATTGTAATCGGATA----GAGTTCTACCATCTTCCAATTGCTTTCCGGCG 4021 Query 33236 AATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACT 33295 || || |||||||||||||| | || || |||||||| || ||| |||||| Sbjct 4022 AAGATCAAACGTTGCTGGTCGGGAGGGATACCTTCTTTATCTTGAATTTTAGCTTTTACA 4081 Query 33296 GTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTT 33355 ||| ||| || || |||| || || ||||| |||||||| ||||| || ||||| Sbjct 4082 TTTTCAATAGTATCCGAAGGTTCGACTTCGAGAGTGATCGTTTTACCCGTTAGGGTTTTC 4141 Query 33356 ACGAAAATTTGCAT 33369 ||||| || ||||| Sbjct 4142 ACGAAGATCTGCAT 4155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318465292190628