Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq63578 118 9e-22
seq28572 93.3 4e-14
>seq63578
Length=26733
Score = 118 bits (130), Expect = 9e-22
Identities = 166/231 (72%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039
|||| ||||| | | || || ||||| || || ||||||||||| || || |||||||
Sbjct 12276 TTCCACCTCGAAGACGTAAAACTAAATGAAGAGTGGATTCTTTTTGGATATTATAATCGC 12335
Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099
|| || | |||||||||||||| || || |||| | ||||| || ||| |
Sbjct 12336 TCAAGGTACGACCGTCTTCCAATTGTTTACCGGCGAAAATTAATCTCTGCTGGTCGGGTG 12395
Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159
| | |||||||||||| |||||| |||||| | ||| || ||| ||||||
Sbjct 12396 GGATGCCTTCTTTGTCTTGAATTTTGGCTTTCACGTTTTCAATAGTATCAGACGGTTCCA 12455
Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGT--TTTGACAAAAATTTGCAT 20208
||||| ||| || ||||| ||||| | ||| |||| ||||||||||||
Sbjct 12456 CTTCCAAGGTGATAGTTTTTCCGGTTAGCGTAATTTG--AAAAATTTGCAT 12504
Score = 102 bits (112), Expect = 7e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039
|||| || ||||| || | ||||| || || || |||||||| || ||||| ||||| |
Sbjct 11592 TTCCACCACGTAATCTGAGTACCAAGTGAAGAGTGGATTCTTTCTGAATGTTATAATCAC 11651
Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099
|| ||| ||||||||| ||||| || ||| | || | | || || || |
Sbjct 11652 TCAGAGTACGGCCATCTTCCAACTGTTTACCGGCAAAGATCAATCGTTGCTGGTCTGGTG 11711
Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159
| | ||||||||| || |||||| ||| || | ||| | |||| ||||||
Sbjct 11712 GTATGCCTTCTTTATCCTGAATTTTAGCTTTGACATTTTCAATGGTATCGGACGGTTCCA 11771
Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
|||| ||| |||||||| || || | |||||| || |||||||||||
Sbjct 11772 CCTCCAAGGTTATGGTTTTTCCAGTGAGCGTTTTAACGAAAATTTGCAT 11820
Score = 100 bits (110), Expect = 2e-16
Identities = 166/237 (70%), Gaps = 2/237 (1%)
Strand=Plus/Plus
Query 19974 ATCATTTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGT 20033
|||| | ||| || || | | ||| |||||||| || || || || || || || || |
Sbjct 11358 ATCAATGTCCGCCACGAAGACGCAAAACCAAATGAAGGGTGGACTCCTTCTGAATATTAT 11417
Query 20034 AATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGAT 20093
|||||| | || |||||||||||| || || || |||| | ||||| || |
Sbjct 11418 AATCGCTTAACGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCTCTGCTGGT 11477
Query 20094 C-GACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCA 20152
| | |||| | |||||||| || |||||| |||||| | | | | ||||
Sbjct 11478 CAGGCGGG-ATACCTTCTTTATCTTGAATTTTAGCTTTCACGTTCTCGATGGTATCGGAC 11536
Query 20153 GGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209
||||| ||||| |||||| || |||||||| || ||||| || ||||||||||||
Sbjct 11537 GGTTCGACTTCCAAGGTAATAGTCTTGCCGGTTAAAGTTTTCACGAAAATTTGCATT 11593
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059
|||||||| || || ||||||||||| || ||||| |||| || || |||||||
Sbjct 12524 ACCAAATGAAGCGTCGATTCTTTTTGAATATTGTAGTCGCTCAATGTGCGGCCATCTTCC 12583
Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119
|||||||| || ||| |||| | || || || || || | |||||||| || |
Sbjct 12584 AATTGTTTACCGGCAAAAATTAACCGTTGCTGGTCAGGTGGGATTCCTTCTTTATCTTGA 12643
Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179
|| || ||| || | | | | |||| ||||| ||||| |||||||||||
Sbjct 12644 ATCTTGGCTTTGACGTTTTCGATCGTATCGGATGGTTCAACTTCCAAAGTAATGGTTTTT 12703
Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAA 20215
||||| | ||||| || || |||||||| || |||
Sbjct 12704 CCGGTAAGAGTTTTTACGAAGATTTGCATCTTGAAA 12739
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056
|| ||||||||||| || ||||| ||||| || |||||||||| | || |||
Sbjct 11837 AAGACCAAATGTAGGGTGGATTCCTTTTGGATATTGTAATCGCTTAACGTGCGGCCGTCT 11896
Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116
||||||||||| || || |||| | | ||| || ||| || | |||||||||||
Sbjct 11897 TCCAATTGTTTACCGGCGAAAATTAATCGCTGCTGGTCGGGTGGAATACCTTCTTTGTCT 11956
Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176
||| || ||| || | | | | |||| || || ||||| || || |||
Sbjct 11957 TGAATCTTGGCTTTAACATTCTCGATTGTATCGGATGGCTCTACTTCCAACGTGATAGTT 12016
Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
|| ||||| | |||||| || |||||||||||
Sbjct 12017 TTACCGGTGAGCGTTTTTACGAAAATTTGCAT 12048
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041
|| || |||| | ||| || ||||| || ||||| ||||| || |||||||| |||| |
Sbjct 12050 CCACCACGTAGACGCAAAACTAAATGCAGCGTAGACTCTTTCTGAATGTTGTAGTCGCTC 12109
Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101
| ||| | |||||| |||||||| || || |||| | || || || ||| ||
Sbjct 12110 AAAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATTAATCTTTGCTGGTCGGGTGGG 12169
Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161
| |||||||| || |||||| ||| || | | | | || ||||| |
Sbjct 12170 ATACCTTCTTTATCTTGGATTTTTGCTTTTACATTTTCGATTGTGTCAGATGGTTCGACT 12229
Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209
|| | || || ||||| || || | |||||| || ||||||||||||
Sbjct 12230 TCTAACGTGATAGTTTTTCCAGTGAGCGTTTTAACGAAAATTTGCATT 12277
>seq28572
Length=14732
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059
|||||||||| |||||||||||||| ||||| || || | ||| || ||||||
Sbjct 2991 ACCAAATGTAAAGTAGATTCTTTTTGGATGTTATAGTCCGAAAGTGTTCTACCATCTTCG 3050
Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119
| |||||| || || |||| || | || || || || | ||||||||| || |
Sbjct 3051 AGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGGATGCCTTCTTTATCCTGA 3110
Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179
|||||| || || | ||| | |||| ||| || ||| | || |||||||||
Sbjct 3111 ATTTTTGCCTTGACGTTTTCAATCGTGTCGCTAGGCTCGACTTCGAGAGTGATGGTTTTG 3170
Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208
||||| || ||||| || || || |||||
Sbjct 3171 CCGGTTAAGGTTTTTACGAAGATCTGCAT 3199
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059
|| ||||| || || ||||||||||| ||||| || || | |||| | ||||||
Sbjct 2763 ACTAAATGAAGGGTCGATTCTTTTTGGATGTTATAGTCAGAGAGAGTTCTTCCATCTTCG 2822
Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119
| ||||||||| || | || || | ||||||||| || | || ||||| ||
Sbjct 2823 AGTTGTTTGCCAGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCTTGT 2882
Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179
||||| || || | ||| || |||| ||| || ||| | ||||| |||||
Sbjct 2883 ATTTTGGCCTTGACGTTTTCAATAGTGTCGCTAGGCTCAACTTCGAGTGTAATCGTTTTA 2942
Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATT 20209
|| ||||| || ||||| || |||||||||
Sbjct 2943 CCAGTCAAGGTCTTGACGAAGATTTGCATT 2972
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419176128584466
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |