Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq7792 120 3e-22
seq13914 96.9 3e-15
>seq7792
Length=27931
Score = 120 bits (132), Expect = 3e-22
Identities = 161/222 (73%), Gaps = 4/222 (2%)
Strand=Plus/Plus
Query 13173 CTTCATCTCTACTTATTAGCTCGTT--TGAAAATGTTAGACCCGGCATAAGCCCTCGTTT 13230
|||| || || ||||| ||||| ||||| || | || ||||| || ||||| ||
Sbjct 19175 CTTCGTCCCTTGATATTAATTCGTTACTGAAA--GTCAATCCAGGCATTAGGCCTCGCTT 19232
Query 13231 TTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAA 13290
||||| ||||||||| |||||||| || ||||| || || ||||| || || |||||
Sbjct 19233 TTTAAGCCAAAATATTGCAGCAAAACTTCCTGAAAAGAAGATGCCTTCGACGGCAGCAAA 19292
Query 13291 CGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTT 13350
|||||| | |||||| ||| | ||| ||||||| ||||||| || |||||||
Sbjct 19293 CGCTATGATCCTTTCTCCAAAAGTAGCATTTTTATCAGCTATCCATTTCAACGCCCAGTC 19352
Query 13351 TGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAA 13392
|||||| | ||||| || ||| |||| || || || ||
Sbjct 19353 TGCTTTCTTCTTAACACAAGGCATTGTTTCAATAGCATTGAA 19394
Score = 89.7 bits (98), Expect = 4e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 13424 TAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAA 13483
|| || ||||||||||| || |||||||||||||||| ||| || || | || || ||
Sbjct 19495 TATGTGTCTATCAATAAACTGTACATTTCTGAATGAACATTCTCTATGGTGATCTGAAAT 19554
Query 13484 CCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTT 13543
|| || || ||||||| || | | |||||||| | || | || |||| |||
Sbjct 19555 CCGTAGAAGAATCTAGCTTCGGGGATTTGAACTTCTTGAAAGAAGCGCTCGACTAAATTT 19614
Query 13544 TCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttt 13603
|| || || || |||||| || || ||||| ||||| | |||| ||| || || ||
Sbjct 19615 TCATTCACGATACCGTCAGATGCGGCGAAAAATGCAAGAACGTGCGAAATGAACTTCTTC 19674
Query 13604 tC 13605
||
Sbjct 19675 TC 19676
>seq13914
Length=11729
Score = 96.9 bits (106), Expect = 3e-15
Identities = 133/186 (72%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479
||| ||||| || ||||| ||||| |||||||||||||| | ||| || || | |||||
Sbjct 8204 AATGTAAGTGTCAATCAACAAGCTGTACATTTCTGAATGTACATTCTCAATTGTGATTTG 8263
Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAA 13539
|| || |||||| |||| || || | | || ||||| | |||| | || ||||
Sbjct 8264 AAATCCGTAAAAAAATCTGGCTTCAGGAATTTGTACTTCTTGGAAAAAACGCTCGACTAA 8323
Query 13540 GTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttt 13599
||||| ||||| || || ||| ||||| ||||| || | | ||| ||| |||||
Sbjct 8324 ATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGGGAAATGAATTT 8383
Query 13600 tttttC 13605
|| ||
Sbjct 8384 CTTCTC 8389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430560164657172
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |