Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq7792 120 3e-22 seq13914 96.9 3e-15 >seq7792 Length=27931 Score = 120 bits (132), Expect = 3e-22 Identities = 161/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTT--TGAAAATGTTAGACCCGGCATAAGCCCTCGTTT 13230 |||| || || ||||| ||||| ||||| || | || ||||| || ||||| || Sbjct 19175 CTTCGTCCCTTGATATTAATTCGTTACTGAAA--GTCAATCCAGGCATTAGGCCTCGCTT 19232 Query 13231 TTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAA 13290 ||||| ||||||||| |||||||| || ||||| || || ||||| || || ||||| Sbjct 19233 TTTAAGCCAAAATATTGCAGCAAAACTTCCTGAAAAGAAGATGCCTTCGACGGCAGCAAA 19292 Query 13291 CGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTT 13350 |||||| | |||||| ||| | ||| ||||||| ||||||| || ||||||| Sbjct 19293 CGCTATGATCCTTTCTCCAAAAGTAGCATTTTTATCAGCTATCCATTTCAACGCCCAGTC 19352 Query 13351 TGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAA 13392 |||||| | ||||| || ||| |||| || || || || Sbjct 19353 TGCTTTCTTCTTAACACAAGGCATTGTTTCAATAGCATTGAA 19394 Score = 89.7 bits (98), Expect = 4e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 13424 TAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAA 13483 || || ||||||||||| || |||||||||||||||| ||| || || | || || || Sbjct 19495 TATGTGTCTATCAATAAACTGTACATTTCTGAATGAACATTCTCTATGGTGATCTGAAAT 19554 Query 13484 CCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTT 13543 || || || ||||||| || | | |||||||| | || | || |||| ||| Sbjct 19555 CCGTAGAAGAATCTAGCTTCGGGGATTTGAACTTCTTGAAAGAAGCGCTCGACTAAATTT 19614 Query 13544 TCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttt 13603 || || || || |||||| || || ||||| ||||| | |||| ||| || || || Sbjct 19615 TCATTCACGATACCGTCAGATGCGGCGAAAAATGCAAGAACGTGCGAAATGAACTTCTTC 19674 Query 13604 tC 13605 || Sbjct 19675 TC 19676 >seq13914 Length=11729 Score = 96.9 bits (106), Expect = 3e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||| ||||| || ||||| ||||| |||||||||||||| | ||| || || | ||||| Sbjct 8204 AATGTAAGTGTCAATCAACAAGCTGTACATTTCTGAATGTACATTCTCAATTGTGATTTG 8263 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAA 13539 || || |||||| |||| || || | | || ||||| | |||| | || |||| Sbjct 8264 AAATCCGTAAAAAAATCTGGCTTCAGGAATTTGTACTTCTTGGAAAAAACGCTCGACTAA 8323 Query 13540 GTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttt 13599 ||||| ||||| || || ||| ||||| ||||| || | | ||| ||| ||||| Sbjct 8324 ATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGGGAAATGAATTT 8383 Query 13600 tttttC 13605 || || Sbjct 8384 CTTCTC 8389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430560164657172