Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_005841.1 Length=41391 Score E Sequences producing significant alignments: (Bits) Value seq9614 228 2e-55 seq19165 183 8e-42 >seq9614 Length=652 Score = 228 bits (252), Expect = 2e-55 Identities = 147/161 (91%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 19319 ATCGCGTCGAACTGATTAATCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCAAACC 19378 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 652 ATCGCGTCGAACTGATTAGCCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCAAACC 593 Query 19379 ATAACCGCCATCGCTGGACTATCGAAGAATGCAAAGCGATTAAGGCGGAGTATCAGCAGA 19438 |||||||||||||||||||||||||||| ||||| ||||| ||||| ||||| || |||| Sbjct 592 ATAACCGCCATCGCTGGACTATCGAAGAGTGCAAGGCGATCAAGGCAGAGTACCAACAGA 533 Query 19439 AACTTAAAGACCTGCGTGACAGCAGAAGAGAGGCAGCATGA 19479 |||| ||||||||||| | |||||||| ||||| |||||| Sbjct 532 AACTCAAAGACCTGCGAAATAGCAGAAGTGAGGCCGCATGA 492 Score = 93.3 bits (102), Expect = 1e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 19689 GAGGCCGCATGACACACACTATCAAAACCATTCCAGACATGCTCATTGAGACATACGGAA 19748 ||||||||||||| | | | ||||||||||||||||||||| |||| |||||||||| Sbjct 503 GAGGCCGCATGACGTTCTCAGTAAAAACCATTCCAGACATGCTCGTTGAAACATACGGAA 444 Query 19749 ACCAGACAGAAGTAGCCAGGCGATTGTCGTGCCATCGAAACACAGTCAGGCGTTATCTGT 19808 | |||||||||||||| | || || || ||| || ||||| || | Sbjct 443 ATCAGACAGAAGTAGCACGCAGACTGAAATGTAGTCGCGGTACGGTCAGAAAATACGTTG 384 Query 19809 ACGACAAAGAAGCCAGGTATCACGCCATCGTTAACGGCGTTTTAATGATTCATC 19862 | || ||||| | | ||||||||||| |||| |||| | ||| |||||| Sbjct 383 ATGATAAAGACGGGAAAATGCACGCCATCGTCAACGACGTTCTCATGGTTCATC 330 >seq19165 Length=1007 Score = 183 bits (202), Expect = 8e-42 Identities = 113/121 (93%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 5549 TTTTGCTGCTTCAAGCTCAAAGCGCAGCTTACCTACCGTAAGCGCAATATCCTCGTTCTC 5608 |||||||| ||||||||||| ||||| || ||||| || |||||||||||||||||||| Sbjct 431 TTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTC 372 Query 5609 CTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTGCCAGCAC 5668 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 371 CTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 312 Query 5669 A 5669 | Sbjct 311 A 311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132203280314196