Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq47435 111 8e-20 seq40388 105 3e-18 seq31443 87.8 9e-13 >seq47435 Length=3661 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 2126 TTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 2185 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 2186 CTGAGCTAATGGGCC 2200 >seq40388 Length=3115 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||| Sbjct 2104 TTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGATGCTCTAACCAA 2045 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 2044 CTGAGCTAATGGGCC 2030 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| ||||||||||| |||| ||||||||||||| || | ||||| ||||| Sbjct 2338 TTGGCCCATGCGAGGATCGAACCCACGACTTTCGCGTTATTAGTACAATGCTCTAACCAA 2279 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 2278 CTGAGCTAATTGGCC 2264 >seq31443 Length=2365 Score = 87.8 bits (96), Expect = 9e-13 Identities = 49/50 (98%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 11480 CGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 4 CGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 53 Lambda K H 0.640 0.410 0.923 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261235015927336