Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq26974 190 3e-44
seq7596 188 1e-43
seq25084 172 9e-39
seq15439 168 1e-37
seq41342 163 4e-36
seq9226 154 2e-33
>seq26974
Length=21855
Score = 190 bits (210), Expect = 3e-44
Identities = 188/243 (77%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| |||||||||||||||||||| || |||||||||||||| | || | ||||| ||
Sbjct 20871 CGTGATAACATCCAAGGAATCACGAAACCAGCTATCCGTCGATTAGCCAGACGTGGAGGT 20930
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||| ||| | || |||||| |||| ||||| | ||||| ||||||||| | || |
Sbjct 20931 GTCAAACGTATTTCGGGATTGATCTACGAAGAAACTCGTGGTGTTTTGAAAGTATTTTTG 20990
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
| | |||||||| ||||||| || ||||| || ||||| ||| | || || ||||||
Sbjct 20991 GAAAACGTTATCCGTGATGCTGTCACTTATACTGAACACGCCAAAAGGAAAACGGTCACC 21050
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696
| |||||| |||| ||||| |||||||||||||| | | | |||||||| ||| ||
Sbjct 21051 GCTATGGATGTCGTATATGCTTTGAAACGTCAAGGAAGAACCTTGTATGGTTTCGGAGGT 21110
Query 16697 TAA 16699
|||
Sbjct 21111 TAA 21113
>seq7596
Length=5486
Score = 188 bits (208), Expect = 1e-43
Identities = 202/267 (76%), Gaps = 0/267 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || |||||||| | | | || |||||||||||||| ||||| || ||||| |||
Sbjct 2041 GCGAAACGTCATCGTAAAGTATTACGTGATAACATCCAAGGTATCACAAAACCAGCAATC 1982
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||| |||| | ||||| || ||||||||| |||| |||||| |||| || || | |
Sbjct 1981 CGTCGTTTGGCCAGACGTGGAGGTGTCAAGCGTATCTCAGGATTGATCTACGAGGAAACT 1922
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| ||| ||||| | ||| | | | || || | |||||| | ||||| ||
Sbjct 1921 CGTGGTGTATTGAAAGTGTTCTTGGAAAATGTCATTCGTGATGCCGTTACTTATACTGAA 1862
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||||||| | || ||||||||| | |||||| | |||||||| ||||||||||||||
Sbjct 1861 CACGCTAAAAGGAAAACTGTCACCGCAATGGATGTTGTCTATGCTTTGAAACGTCAAGGA 1802
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | | |||||||||||| |||||
Sbjct 1801 AGAACTTTGTATGGTTTTGGAGGTTAA 1775
>seq25084
Length=13041
Score = 172 bits (190), Expect = 9e-39
Identities = 199/268 (74%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| || |||||||| | | | | || |||||||||||||| ||||| || || || ||
Sbjct 2956 CGCCAAACGTCATCGTAAAGTTTTACGTGATAACATCCAAGGTATCACGAAACCCGCCAT 2897
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||||| |||| | ||||| || ||||| ||| |||| || ||| | || ||||| |
Sbjct 2896 CCGTCGTTTGGCCAGACGTGGAGGTGTCAAACGTATCTCCGGTTTGATTTACGAAGAAAC 2837
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||||| ||| |||||| | || | | | ||| || | ||||||| || ||| |||||
Sbjct 2836 TCGTGGTGTATTGAAGGTGTTTTTGGAAAACGTCATTCGTGATGCTGTCACCTACACCGA 2777
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||||| | || || ||||| |||||||| | |||||||| ||||||| || ||
Sbjct 2776 ACACGCTAAGAGGAAAACCGTCACAGCCATGGATGTTGTCTATGCGCTGAAACGCCAGGG 2717
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | | || ||||||||| |||||
Sbjct 2716 AAGAACCTTGTACGGTTTTGGAGGTTAA 2689
>seq15439
Length=7648
Score = 168 bits (186), Expect = 1e-37
Identities = 201/273 (74%), Gaps = 0/273 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| || |||||||| | | || || ||||| |||||||| ||||| || ||||| ||
Sbjct 1536 CGCCAAACGTCATCGTAAAGTACTACGTGATAATATCCAAGGTATCACAAAACCAGCAAT 1595
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||||| | || | |||||||| || || ||| | || || ||| | || ||||| |
Sbjct 1596 CCGTCGTTTAGCCAGACGTGGTGGTGTGAAACGTATTTCCGGTTTGATTTACGAAGAAAC 1655
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| ||||||||| | ||| | | | |||||||| ||||||| | ||| |||||
Sbjct 1656 CCGTGGTGTTTTGAAAGTTTTCTTGGAAAACGTTATCCGTGATGCTGTTACCTACACCGA 1715
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||||| | || || || || |||||||| | ||||| || ||||||||||| ||
Sbjct 1716 ACACGCTAAGAGGAAAACCGTTACAGCCATGGATGTTGTCTACGCTTTGAAACGTCAGGG 1775
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTC 16704
| | | || ||||| ||| |||||| |||
Sbjct 1776 AAGAACCTTATACGGTTTCGGAGGTTAATTTTC 1808
>seq41342
Length=13451
Score = 163 bits (180), Expect = 4e-36
Identities = 200/273 (73%), Gaps = 0/273 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || |||||||| | | ||||| ||||||||||| || |||||||| || || |||
Sbjct 1866 GCCAAACGTCATCGTAAAGTACTTCGTGATAACATCCAGGGTATCACCAAACCCGCCATC 1925
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||| | || | ||||| || ||||| ||| |||| || || |||| ||||| | |
Sbjct 1926 CGTCGTTTAGCCAGACGTGGAGGTGTCAAACGTATCTCCGGTTTAATCTACGAAGAAACT 1985
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| || ||||| | ||| | | | |||||| | ||||||| | ||||||||
Sbjct 1986 CGTGGAGTGTTGAAAGTTTTCTTGGAAAACGTTATTCGTGATGCTGTAACTTATACCGAA 2045
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || | || || ||||| |||||||| | || || || || |||||||||||
Sbjct 2046 CACGCCAAGAGGAAAACCGTCACTGCCATGGATGTTGTATACGCTTTAAAACGTCAAGGA 2105
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705
| | | || ||||||||| ||||| || ||
Sbjct 2106 AGAACTTTGTACGGTTTTGGAGGTTAAGCTGCT 2138
>seq9226
Length=11944
Score = 154 bits (170), Expect = 2e-33
Identities = 195/268 (73%), Gaps = 0/268 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||| |||||||| | | | || || ||||||||||| ||||| ||||| |||||
Sbjct 827 CGCTAAACGTCATCGTAAAGTATTACGTGACAACATCCAAGGTATCACGAAGCCCGCTAT 886
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||||| | || | ||||| || || || ||| |||| ||||| | || ||||| |
Sbjct 887 CCGTCGTTTAGCCAGACGTGGAGGTGTGAAACGTATCTCCGGATTAATTTACGAAGAAAC 946
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| ||| |||||| | || | | | |||||||| ||||| || ||||||||
Sbjct 947 CCGTGGTGTATTGAAGGTGTTTTTGGAAAACGTTATCCGAGATGCCGTCACTTATACCGA 1006
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||| || | |||||||| || | |||||| | || || || |||||||||||||
Sbjct 1007 ACACGCAAAGAGGAAGACTGTAACAGCTATGGATGTTGTATACGCCCTGAAACGTCAAGG 1066
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | | || ||||| ||| |||||
Sbjct 1067 AAGAACCTTATACGGTTTCGGAGGTTAA 1094
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79001702517498
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |