Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq26974 190 3e-44 seq7596 188 1e-43 seq25084 172 9e-39 seq15439 168 1e-37 seq41342 163 4e-36 seq9226 154 2e-33 >seq26974 Length=21855 Score = 190 bits (210), Expect = 3e-44 Identities = 188/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || |||||||||||||||||||| || |||||||||||||| | || | ||||| || Sbjct 20871 CGTGATAACATCCAAGGAATCACGAAACCAGCTATCCGTCGATTAGCCAGACGTGGAGGT 20930 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||| ||| | || |||||| |||| ||||| | ||||| ||||||||| | || | Sbjct 20931 GTCAAACGTATTTCGGGATTGATCTACGAAGAAACTCGTGGTGTTTTGAAAGTATTTTTG 20990 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | |||||||| ||||||| || ||||| || ||||| ||| | || || |||||| Sbjct 20991 GAAAACGTTATCCGTGATGCTGTCACTTATACTGAACACGCCAAAAGGAAAACGGTCACC 21050 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | |||||| |||| ||||| |||||||||||||| | | | |||||||| ||| || Sbjct 21051 GCTATGGATGTCGTATATGCTTTGAAACGTCAAGGAAGAACCTTGTATGGTTTCGGAGGT 21110 Query 16697 TAA 16699 ||| Sbjct 21111 TAA 21113 >seq7596 Length=5486 Score = 188 bits (208), Expect = 1e-43 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | | || |||||||||||||| ||||| || ||||| ||| Sbjct 2041 GCGAAACGTCATCGTAAAGTATTACGTGATAACATCCAAGGTATCACAAAACCAGCAATC 1982 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||| | ||||| || ||||||||| |||| |||||| |||| || || | | Sbjct 1981 CGTCGTTTGGCCAGACGTGGAGGTGTCAAGCGTATCTCAGGATTGATCTACGAGGAAACT 1922 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | ||| | | | || || | |||||| | ||||| || Sbjct 1921 CGTGGTGTATTGAAAGTGTTCTTGGAAAATGTCATTCGTGATGCCGTTACTTATACTGAA 1862 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||||||| | || ||||||||| | |||||| | |||||||| |||||||||||||| Sbjct 1861 CACGCTAAAAGGAAAACTGTCACCGCAATGGATGTTGTCTATGCTTTGAAACGTCAAGGA 1802 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | |||||||||||| ||||| Sbjct 1801 AGAACTTTGTATGGTTTTGGAGGTTAA 1775 >seq25084 Length=13041 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | | | || |||||||||||||| ||||| || || || || Sbjct 2956 CGCCAAACGTCATCGTAAAGTTTTACGTGATAACATCCAAGGTATCACGAAACCCGCCAT 2897 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| |||| | ||||| || ||||| ||| |||| || ||| | || ||||| | Sbjct 2896 CCGTCGTTTGGCCAGACGTGGAGGTGTCAAACGTATCTCCGGTTTGATTTACGAAGAAAC 2837 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| |||||| | || | | | ||| || | ||||||| || ||| ||||| Sbjct 2836 TCGTGGTGTATTGAAGGTGTTTTTGGAAAACGTCATTCGTGATGCTGTCACCTACACCGA 2777 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| | || || ||||| |||||||| | |||||||| ||||||| || || Sbjct 2776 ACACGCTAAGAGGAAAACCGTCACAGCCATGGATGTTGTCTATGCGCTGAAACGCCAGGG 2717 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || ||||||||| ||||| Sbjct 2716 AAGAACCTTGTACGGTTTTGGAGGTTAA 2689 >seq15439 Length=7648 Score = 168 bits (186), Expect = 1e-37 Identities = 201/273 (74%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | || || ||||| |||||||| ||||| || ||||| || Sbjct 1536 CGCCAAACGTCATCGTAAAGTACTACGTGATAATATCCAAGGTATCACAAAACCAGCAAT 1595 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| | || | |||||||| || || ||| | || || ||| | || ||||| | Sbjct 1596 CCGTCGTTTAGCCAGACGTGGTGGTGTGAAACGTATTTCCGGTTTGATTTACGAAGAAAC 1655 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||||||||| | ||| | | | |||||||| ||||||| | ||| ||||| Sbjct 1656 CCGTGGTGTTTTGAAAGTTTTCTTGGAAAACGTTATCCGTGATGCTGTTACCTACACCGA 1715 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| | || || || || |||||||| | ||||| || ||||||||||| || Sbjct 1716 ACACGCTAAGAGGAAAACCGTTACAGCCATGGATGTTGTCTACGCTTTGAAACGTCAGGG 1775 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTC 16704 | | | || ||||| ||| |||||| ||| Sbjct 1776 AAGAACCTTATACGGTTTCGGAGGTTAATTTTC 1808 >seq41342 Length=13451 Score = 163 bits (180), Expect = 4e-36 Identities = 200/273 (73%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | ||||| ||||||||||| || |||||||| || || ||| Sbjct 1866 GCCAAACGTCATCGTAAAGTACTTCGTGATAACATCCAGGGTATCACCAAACCCGCCATC 1925 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | || | ||||| || ||||| ||| |||| || || |||| ||||| | | Sbjct 1926 CGTCGTTTAGCCAGACGTGGAGGTGTCAAACGTATCTCCGGTTTAATCTACGAAGAAACT 1985 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | ||| | | | |||||| | ||||||| | |||||||| Sbjct 1986 CGTGGAGTGTTGAAAGTTTTCTTGGAAAACGTTATTCGTGATGCTGTAACTTATACCGAA 2045 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | || || ||||| |||||||| | || || || || ||||||||||| Sbjct 2046 CACGCCAAGAGGAAAACCGTCACTGCCATGGATGTTGTATACGCTTTAAAACGTCAAGGA 2105 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 | | | || ||||||||| ||||| || || Sbjct 2106 AGAACTTTGTACGGTTTTGGAGGTTAAGCTGCT 2138 >seq9226 Length=11944 Score = 154 bits (170), Expect = 2e-33 Identities = 195/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| |||||||| | | | || || ||||||||||| ||||| ||||| ||||| Sbjct 827 CGCTAAACGTCATCGTAAAGTATTACGTGACAACATCCAAGGTATCACGAAGCCCGCTAT 886 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| | || | ||||| || || || ||| |||| ||||| | || ||||| | Sbjct 887 CCGTCGTTTAGCCAGACGTGGAGGTGTGAAACGTATCTCCGGATTAATTTACGAAGAAAC 946 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| |||||| | || | | | |||||||| ||||| || |||||||| Sbjct 947 CCGTGGTGTATTGAAGGTGTTTTTGGAAAACGTTATCCGAGATGCCGTCACTTATACCGA 1006 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | |||||||| || | |||||| | || || || ||||||||||||| Sbjct 1007 ACACGCAAAGAGGAAGACTGTAACAGCTATGGATGTTGTATACGCCCTGAAACGTCAAGG 1066 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || ||||| ||| ||||| Sbjct 1067 AAGAACCTTATACGGTTTCGGAGGTTAA 1094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79001702517498