Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_006658.1
Length=30655
Score E
Sequences producing significant alignments: (Bits) Value
seq7375 165 2e-36
seq21220 138 2e-28
seq67019 136 8e-28
seq31134 136 8e-28
>seq7375
Length=1199
Score = 165 bits (182), Expect = 2e-36
Identities = 398/596 (67%), Gaps = 26/596 (4%)
Strand=Plus/Plus
Query 4141 TGTGCTAATAGACATGCTGAAGCTAACAACCGGTATATGGGCAAAGATTTTGATTCAAAC 4200
||| | |||||||||||| ||||||| || ||||||||| || | |||||| |||
Sbjct 404 TGTTCAAATAGACATGCTAAAGCTAATAATAAGTATATGGGAAAGAAATTTGATAAAAAT 463
Query 4201 AACCCCGAAAC-ATACCTGATGTACTAT---GATGTAAATAATTTGTATGGCGCAGCGAT 4256
|| || | ||| | || | ||| || | |||||||| ||||| || ||
Sbjct 464 AAG---GATTCTATATTT-ATTCAATATTTAGACGCTAATAATTTATATGGTTGGGCAAT 519
Query 4257 GAGTATGTCTTTACCAAAGGGTAAATTTGAATGGGTTGAAAATGTAGA------TGATGT 4310
| || | |||||| | || |||||||||| |||| ||| |||||
Sbjct 520 GTCTAAATATTTACCTTATGGGGGATTTGAATGGAG---AAATCCAGAATATTTTGATGA 576
Query 4311 AGATC-AGTTTT-----TCAATGATGATGAGAGTGTAGGCTACATCCTTGAAGTAGATCT 4364
||| | || | | || |||||| ||| | || || | ||||||||||| |
Sbjct 577 AGAAAGAATTCTAAAAATGAAAGATGATCAGAAAATTGGATATCTTTTTGAAGTAGATTT 636
Query 4365 ACACTATCCTGAGAATTTACATGATCTACACAAAGATCTACCTTTATGCCCAGAACATTT 4424
| | |||||| | | |||||||| |||| ||||||||||| || |||||| |
Sbjct 637 AAAATATCCTAAAGAATTACATGACAAACACTCAGATCTACCTTATTGTCCAGAAAA--- 693
Query 4425 TGTACCACCTGGTAGCAAGCAACAAAAACTCACGACAACTCTGTACGATAAAAATAATTA 4484
|||| || |||| | || |||| | ||||| | || |||||||| |||||
Sbjct 694 TGTAATTAATGATAGCCAATTACCAAAATTATTTACAACATTATATGATAAAAAGAATTA 753
Query 4485 TGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAAT 4544
|||| |||| ||| |||| | |||||| ||| || || ||| | | |||||
Sbjct 754 TGTTCTTCATTATTTAAATCTTAAACAAGCTTTGGAAGCTGGATTAAAATTAGAAAAAAT 813
Query 4545 ACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATAC 4604
|| ||| | |||||||| ||||| || ||| | ||| |||||| || || |||||
Sbjct 814 TCATAGAGTTATAAAATTTGATCAATCTGATTGGATGAAAGTATATATTGAAAAGAATAC 873
Query 4605 CGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAA 4664
|| || || ||| || ||||| || ||||| | || | ||||| ||||||||
Sbjct 874 AAAATTGAGACAAGCAGCGAAAAATGATTTTGAAAAGGATTTCTTCAAATTGATGAATAA 933
Query 4665 TGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAATATAAAGATATATATTTAA 4720
| | |||||||||| || ||| |||||| ||||| || ||||||| | ||||
Sbjct 934 TTCTGTTTTTGGAAGAACAATGATGAATGTGAGAAAACATGTAGATATAAAATTAA 989
>seq21220
Length=4837
Score = 138 bits (152), Expect = 2e-28
Identities = 268/395 (68%), Gaps = 13/395 (3%)
Strand=Plus/Minus
Query 4324 AATGATGATGAGAGTGTAGGCTACATCCTTGAAGTAGATCTACACTATCCTGAGAATTTA 4383
|| |||||| ||| | || || | ||||||||||| | | |||||| || | |||
Sbjct 3074 AAAGATGATCAGAAAATTGGGTATCTTTTTGAAGTAGATTTGAAATATCCTAAGGAATTA 3015
Query 4384 CATGATCTACACAAAGATCTACCTTTATGCCC--AGAACATTTTGTACCACCTGGTAGCA 4441
|||||| ||| ||| |||| | ||||| ||||| || || || |
Sbjct 3014 CATGATAAACATTCTGATTTACCCTATTGCCCTAAGAACG--------CAATTGATAATA 2963
Query 4442 AGCAACA---AAAACTCACGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATA 4498
| |||| |||| | ||||| | || |||||||| || |||||| |||| |||
Sbjct 2962 ATCAACTTCCAAAATTATTTACAACATTATATGATAAAAAAAAATATGTTCTTCATTATT 2903
Query 4499 AAAATTTGAAACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGA 4558
|||| |||||||| | | | || || | |||||||||| || | |
Sbjct 2902 TAAATCTGAAACAAGCTCTTAAAGCGGGACTAAAATTGGAGAAAATACATAGGGTTATAA 2843
Query 4559 AATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAAC 4618
||||||| |||| |||||| | ||| |||||| || |||||||| | | | |||
Sbjct 2842 AATTTGATCAATTTGACTGGATGAAAGTATATATTGAAAAAAATACAGAACTAAGGAAAA 2783
Query 4619 TAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAA 4678
|||||||||||| || |||||| | || | |||||||||||| ||| | ||||||||||
Sbjct 2782 AAGCTAAGAATGATTTTGAAAAAGATTTCTTTAAATTAATGAACAATTCTGTTTTTGGAA 2723
Query 4679 AGACGATGGAGAATGTACGAAAATATAAAGATATA 4713
|| ||| |||||| | ||| || |||||||
Sbjct 2722 GAACAATGATGAATGTTAGGAAACATGTAGATATA 2688
>seq67019
Length=563
Score = 136 bits (150), Expect = 8e-28
Identities = 271/398 (68%), Gaps = 5/398 (1%)
Strand=Plus/Minus
Query 4324 AATGATGATGAGAGTGTAGGCTACATCCTTGAAGTAGATCTACACTATCCTGAGAATTTA 4383
|| |||||| ||| | || || | ||||||| ||| || | ||||| || | |||
Sbjct 543 AAAGATGATCAGAAAATTGGATATCTTTTTGAAGTGGATTTAAAATATCCCGAAGAATTA 484
Query 4384 CATGATCTACACAAAGATCTACCTTTATGCCCAGAACATTTTGTACCACCTGGTAGCAAG 4443
|||||| ||| ||| |||||| || || ||| || ||| || || | |
Sbjct 483 CATGATAAACATTCTGATTTACCTTATTGTCCTGAAAAT---GTAATTGATGATAACCAA 427
Query 4444 CAACAAAAACTCACGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAAT 4503
| | |||| | ||||| | || |||||||| || |||||| |||| ||| ||||
Sbjct 426 CTTCCAAAATTATTTACAACATTATATGATAAAAAGAAATATGTTCTTCATTATTTAAAT 367
Query 4504 TTGAAACAATGT-TTAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATT 4562
| |||||| | ||| | | |||| || | ||||| | || ||| | |||||
Sbjct 366 CTTAAACAAGCTCTTAAAGCTGGGTT-AGAATTAGAGAAAGTTCATAGAGTTATAAAATT 308
Query 4563 TGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGC 4622
||| || ||||||||| | || | |||||| || ||||||| | || || |||
Sbjct 307 TGATCAGTCAGACTGGATGAAGTTATATATTGAATAAAATACAAAACTGAGACAAGAAGC 248
Query 4623 TAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGAC 4682
||||||||| | |||||| | || | ||| ||||||||||| | |||||||||| ||
Sbjct 247 TAAGAATGATCTTGAAAAAGATTTCTTTAAGCTAATGAATAATTCTGTTTTTGGAAGAAC 188
Query 4683 GATGGAGAATGTACGAAAATATAAAGATATATATTTAA 4720
||| |||||| |||| || ||||||| | ||||
Sbjct 187 AATGATGAATGTGAGAAAGCATGTAGATATAAAATTAA 150
>seq31134
Length=3006
Score = 136 bits (150), Expect = 8e-28
Identities = 390/598 (65%), Gaps = 30/598 (5%)
Strand=Plus/Plus
Query 4141 TGTGCTAATAGACATGCTGAAGCTAACAACCGGTATATGGGCAAAGATTTTGATTCAAAC 4200
||| | |||||| |||| ||||||| || || ||||| || | |||||| ||||
Sbjct 1443 TGTTCAAATAGATATGCAAAAGCTAATAATAAATACATGGGAAAGAAATTTGATAAAAAC 1502
Query 4201 AACCCCGAAACATACCTGATGTACTAT---GATGTAAATAATTTGTATGGCGCAGCGATG 4257
|| || | | || | ||| |||| ||||||||| ||||| || |||
Sbjct 1503 AAG---GATTCTGTATTTATTCAATATTTAGATGCAAATAATTTATATGGATGGGCTATG 1559
Query 4258 AGTATGTCTTTACCAAAGGGTAAATTTGAATGGGTTGAAAATGTAGATGATGTAGATCAG 4317
||| || |||||| | || |||||||||| | ||| ||| || | ||| ||
Sbjct 1560 TGTAAGTATTTACCTTATGGAGGATTTGAATGGA---AGAATCCAGAATATTTTGATGAG 1616
Query 4318 -------TTTT-----TCAATGATGATGAGAGTGTAGGCTACATCCTTGAAGTAGATCTA 4365
|| | | || |||||| ||| | || || | ||||||| ||| |
Sbjct 1617 AATAGAATTATAAAAATGAAAGATGATCAGAAAATTGGATATCTTTTTGAAGTGGATTTG 1676
Query 4366 CACTATCCTGAGAATTTACATGATCTACACAAAGATCTACCTTTATGCCCAGAACATTTT 4425
| |||||| | | |||||||| ||| ||| |||||| || || || || |
Sbjct 1677 AAATATCCTAAAGAGTTACATGACAAACATTCTGATTTACCTTATTGTCCTGAGAATGTA 1736
Query 4426 GTACCACCTGGTAGCAAGCAACA---AAAACTCACGACAACTCTGTACGATAAAAATAAT 4482
| || || || |||| |||| | ||||| | || |||||||| ||
Sbjct 1737 AT------TGATAATAATCAACTTCCAAAATTATTTACAACATTATATGATAAAAAGAAG 1790
Query 4483 TATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAA 4542
||||| |||| || |||| | | |||| | | | ||| ||| | | |||
Sbjct 1791 TATGTCCTTCATTACTTAAATCTTAGACAAGCTCTTAAAGCAGGATTAAAATTGGACAAA 1850
Query 4543 ATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAAT 4602
||||| ||| | |||||||| ||||| || ||| | ||| |||||| || ||||||
Sbjct 1851 ATACATAGAGTTATAAAATTTGATCAATCTGATTGGATGAAAGTATATATTGAAAAAAAT 1910
Query 4603 ACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAAT 4662
|| | || || || |||||||||||| || |||||| | || | |||||||||||||
Sbjct 1911 ACGGAATTAAGACAAAAAGCTAAGAATGACTTTGAAAAAGATTTCTTTAAATTAATGAAT 1970
Query 4663 AATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAATATAAAGATATATATTTAA 4720
||| | |||||||||| || ||| |||||| |||| || ||||||| | ||||
Sbjct 1971 AATTCTGTTTTTGGAAGAACAATGATGAATGTTAGAAAGCATGTAGATATAAAATTAA 2028
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 97880875229844
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |