Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq7375 165 2e-36 seq21220 138 2e-28 seq67019 136 8e-28 seq31134 136 8e-28 >seq7375 Length=1199 Score = 165 bits (182), Expect = 2e-36 Identities = 398/596 (67%), Gaps = 26/596 (4%) Strand=Plus/Plus Query 4141 TGTGCTAATAGACATGCTGAAGCTAACAACCGGTATATGGGCAAAGATTTTGATTCAAAC 4200 ||| | |||||||||||| ||||||| || ||||||||| || | |||||| ||| Sbjct 404 TGTTCAAATAGACATGCTAAAGCTAATAATAAGTATATGGGAAAGAAATTTGATAAAAAT 463 Query 4201 AACCCCGAAAC-ATACCTGATGTACTAT---GATGTAAATAATTTGTATGGCGCAGCGAT 4256 || || | ||| | || | ||| || | |||||||| ||||| || || Sbjct 464 AAG---GATTCTATATTT-ATTCAATATTTAGACGCTAATAATTTATATGGTTGGGCAAT 519 Query 4257 GAGTATGTCTTTACCAAAGGGTAAATTTGAATGGGTTGAAAATGTAGA------TGATGT 4310 | || | |||||| | || |||||||||| |||| ||| ||||| Sbjct 520 GTCTAAATATTTACCTTATGGGGGATTTGAATGGAG---AAATCCAGAATATTTTGATGA 576 Query 4311 AGATC-AGTTTT-----TCAATGATGATGAGAGTGTAGGCTACATCCTTGAAGTAGATCT 4364 ||| | || | | || |||||| ||| | || || | ||||||||||| | Sbjct 577 AGAAAGAATTCTAAAAATGAAAGATGATCAGAAAATTGGATATCTTTTTGAAGTAGATTT 636 Query 4365 ACACTATCCTGAGAATTTACATGATCTACACAAAGATCTACCTTTATGCCCAGAACATTT 4424 | | |||||| | | |||||||| |||| ||||||||||| || |||||| | Sbjct 637 AAAATATCCTAAAGAATTACATGACAAACACTCAGATCTACCTTATTGTCCAGAAAA--- 693 Query 4425 TGTACCACCTGGTAGCAAGCAACAAAAACTCACGACAACTCTGTACGATAAAAATAATTA 4484 |||| || |||| | || |||| | ||||| | || |||||||| ||||| Sbjct 694 TGTAATTAATGATAGCCAATTACCAAAATTATTTACAACATTATATGATAAAAAGAATTA 753 Query 4485 TGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAAT 4544 |||| |||| ||| |||| | |||||| ||| || || ||| | | ||||| Sbjct 754 TGTTCTTCATTATTTAAATCTTAAACAAGCTTTGGAAGCTGGATTAAAATTAGAAAAAAT 813 Query 4545 ACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATAC 4604 || ||| | |||||||| ||||| || ||| | ||| |||||| || || ||||| Sbjct 814 TCATAGAGTTATAAAATTTGATCAATCTGATTGGATGAAAGTATATATTGAAAAGAATAC 873 Query 4605 CGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAA 4664 || || || ||| || ||||| || ||||| | || | ||||| |||||||| Sbjct 874 AAAATTGAGACAAGCAGCGAAAAATGATTTTGAAAAGGATTTCTTCAAATTGATGAATAA 933 Query 4665 TGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAATATAAAGATATATATTTAA 4720 | | |||||||||| || ||| |||||| ||||| || ||||||| | |||| Sbjct 934 TTCTGTTTTTGGAAGAACAATGATGAATGTGAGAAAACATGTAGATATAAAATTAA 989 >seq21220 Length=4837 Score = 138 bits (152), Expect = 2e-28 Identities = 268/395 (68%), Gaps = 13/395 (3%) Strand=Plus/Minus Query 4324 AATGATGATGAGAGTGTAGGCTACATCCTTGAAGTAGATCTACACTATCCTGAGAATTTA 4383 || |||||| ||| | || || | ||||||||||| | | |||||| || | ||| Sbjct 3074 AAAGATGATCAGAAAATTGGGTATCTTTTTGAAGTAGATTTGAAATATCCTAAGGAATTA 3015 Query 4384 CATGATCTACACAAAGATCTACCTTTATGCCC--AGAACATTTTGTACCACCTGGTAGCA 4441 |||||| ||| ||| |||| | ||||| ||||| || || || | Sbjct 3014 CATGATAAACATTCTGATTTACCCTATTGCCCTAAGAACG--------CAATTGATAATA 2963 Query 4442 AGCAACA---AAAACTCACGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATA 4498 | |||| |||| | ||||| | || |||||||| || |||||| |||| ||| Sbjct 2962 ATCAACTTCCAAAATTATTTACAACATTATATGATAAAAAAAAATATGTTCTTCATTATT 2903 Query 4499 AAAATTTGAAACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGA 4558 |||| |||||||| | | | || || | |||||||||| || | | Sbjct 2902 TAAATCTGAAACAAGCTCTTAAAGCGGGACTAAAATTGGAGAAAATACATAGGGTTATAA 2843 Query 4559 AATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAAC 4618 ||||||| |||| |||||| | ||| |||||| || |||||||| | | | ||| Sbjct 2842 AATTTGATCAATTTGACTGGATGAAAGTATATATTGAAAAAAATACAGAACTAAGGAAAA 2783 Query 4619 TAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAA 4678 |||||||||||| || |||||| | || | |||||||||||| ||| | |||||||||| Sbjct 2782 AAGCTAAGAATGATTTTGAAAAAGATTTCTTTAAATTAATGAACAATTCTGTTTTTGGAA 2723 Query 4679 AGACGATGGAGAATGTACGAAAATATAAAGATATA 4713 || ||| |||||| | ||| || ||||||| Sbjct 2722 GAACAATGATGAATGTTAGGAAACATGTAGATATA 2688 >seq67019 Length=563 Score = 136 bits (150), Expect = 8e-28 Identities = 271/398 (68%), Gaps = 5/398 (1%) Strand=Plus/Minus Query 4324 AATGATGATGAGAGTGTAGGCTACATCCTTGAAGTAGATCTACACTATCCTGAGAATTTA 4383 || |||||| ||| | || || | ||||||| ||| || | ||||| || | ||| Sbjct 543 AAAGATGATCAGAAAATTGGATATCTTTTTGAAGTGGATTTAAAATATCCCGAAGAATTA 484 Query 4384 CATGATCTACACAAAGATCTACCTTTATGCCCAGAACATTTTGTACCACCTGGTAGCAAG 4443 |||||| ||| ||| |||||| || || ||| || ||| || || | | Sbjct 483 CATGATAAACATTCTGATTTACCTTATTGTCCTGAAAAT---GTAATTGATGATAACCAA 427 Query 4444 CAACAAAAACTCACGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAAT 4503 | | |||| | ||||| | || |||||||| || |||||| |||| ||| |||| Sbjct 426 CTTCCAAAATTATTTACAACATTATATGATAAAAAGAAATATGTTCTTCATTATTTAAAT 367 Query 4504 TTGAAACAATGT-TTAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATT 4562 | |||||| | ||| | | |||| || | ||||| | || ||| | ||||| Sbjct 366 CTTAAACAAGCTCTTAAAGCTGGGTT-AGAATTAGAGAAAGTTCATAGAGTTATAAAATT 308 Query 4563 TGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGC 4622 ||| || ||||||||| | || | |||||| || ||||||| | || || ||| Sbjct 307 TGATCAGTCAGACTGGATGAAGTTATATATTGAATAAAATACAAAACTGAGACAAGAAGC 248 Query 4623 TAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGAC 4682 ||||||||| | |||||| | || | ||| ||||||||||| | |||||||||| || Sbjct 247 TAAGAATGATCTTGAAAAAGATTTCTTTAAGCTAATGAATAATTCTGTTTTTGGAAGAAC 188 Query 4683 GATGGAGAATGTACGAAAATATAAAGATATATATTTAA 4720 ||| |||||| |||| || ||||||| | |||| Sbjct 187 AATGATGAATGTGAGAAAGCATGTAGATATAAAATTAA 150 >seq31134 Length=3006 Score = 136 bits (150), Expect = 8e-28 Identities = 390/598 (65%), Gaps = 30/598 (5%) Strand=Plus/Plus Query 4141 TGTGCTAATAGACATGCTGAAGCTAACAACCGGTATATGGGCAAAGATTTTGATTCAAAC 4200 ||| | |||||| |||| ||||||| || || ||||| || | |||||| |||| Sbjct 1443 TGTTCAAATAGATATGCAAAAGCTAATAATAAATACATGGGAAAGAAATTTGATAAAAAC 1502 Query 4201 AACCCCGAAACATACCTGATGTACTAT---GATGTAAATAATTTGTATGGCGCAGCGATG 4257 || || | | || | ||| |||| ||||||||| ||||| || ||| Sbjct 1503 AAG---GATTCTGTATTTATTCAATATTTAGATGCAAATAATTTATATGGATGGGCTATG 1559 Query 4258 AGTATGTCTTTACCAAAGGGTAAATTTGAATGGGTTGAAAATGTAGATGATGTAGATCAG 4317 ||| || |||||| | || |||||||||| | ||| ||| || | ||| || Sbjct 1560 TGTAAGTATTTACCTTATGGAGGATTTGAATGGA---AGAATCCAGAATATTTTGATGAG 1616 Query 4318 -------TTTT-----TCAATGATGATGAGAGTGTAGGCTACATCCTTGAAGTAGATCTA 4365 || | | || |||||| ||| | || || | ||||||| ||| | Sbjct 1617 AATAGAATTATAAAAATGAAAGATGATCAGAAAATTGGATATCTTTTTGAAGTGGATTTG 1676 Query 4366 CACTATCCTGAGAATTTACATGATCTACACAAAGATCTACCTTTATGCCCAGAACATTTT 4425 | |||||| | | |||||||| ||| ||| |||||| || || || || | Sbjct 1677 AAATATCCTAAAGAGTTACATGACAAACATTCTGATTTACCTTATTGTCCTGAGAATGTA 1736 Query 4426 GTACCACCTGGTAGCAAGCAACA---AAAACTCACGACAACTCTGTACGATAAAAATAAT 4482 | || || || |||| |||| | ||||| | || |||||||| || Sbjct 1737 AT------TGATAATAATCAACTTCCAAAATTATTTACAACATTATATGATAAAAAGAAG 1790 Query 4483 TATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAA 4542 ||||| |||| || |||| | | |||| | | | ||| ||| | | ||| Sbjct 1791 TATGTCCTTCATTACTTAAATCTTAGACAAGCTCTTAAAGCAGGATTAAAATTGGACAAA 1850 Query 4543 ATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAAT 4602 ||||| ||| | |||||||| ||||| || ||| | ||| |||||| || |||||| Sbjct 1851 ATACATAGAGTTATAAAATTTGATCAATCTGATTGGATGAAAGTATATATTGAAAAAAAT 1910 Query 4603 ACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAAT 4662 || | || || || |||||||||||| || |||||| | || | ||||||||||||| Sbjct 1911 ACGGAATTAAGACAAAAAGCTAAGAATGACTTTGAAAAAGATTTCTTTAAATTAATGAAT 1970 Query 4663 AATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAATATAAAGATATATATTTAA 4720 ||| | |||||||||| || ||| |||||| |||| || ||||||| | |||| Sbjct 1971 AATTCTGTTTTTGGAAGAACAATGATGAATGTTAGAAAGCATGTAGATATAAAATTAA 2028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97880875229844