Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq9614 156 1e-33 seq19165 125 2e-24 >seq9614 Length=652 Score = 156 bits (172), Expect = 1e-33 Identities = 119/141 (84%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 42440 CGCATAGGGATTGCAGCAGTAGACGAAATCGAATCTGACCATAAGCGGCATCGCTGGACT 42499 ||||| ||| | ||||||||||||||||||||| ||||||| || |||||||||||| Sbjct 632 CGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCAAACCATAACCGCCATCGCTGGACT 573 Query 42500 ACCGAAGAGTGCAAAGCGATTAAGGCGGAGTATCAGCAGAAGCTTAAAGACCTGCGTGAC 42559 | |||||||||||| ||||| ||||| ||||| || ||||| || ||||||||||| | Sbjct 572 ATCGAAGAGTGCAAGGCGATCAAGGCAGAGTACCAACAGAAACTCAAAGACCTGCGAAAT 513 Query 42560 AGCAGAAGCGAGGCAGCATGA 42580 |||||||| ||||| |||||| Sbjct 512 AGCAGAAGTGAGGCCGCATGA 492 Score = 98.7 bits (108), Expect = 3e-16 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 42790 GAGGCCGCATGACACACACTGTCAAAACCATTCCAGACATGCTCATAGAGACATACGGAA 42849 ||||||||||||| | | || ||||||||||||||||||||| | || |||||||||| Sbjct 503 GAGGCCGCATGACGTTCTCAGTAAAAACCATTCCAGACATGCTCGTTGAAACATACGGAA 444 Query 42850 ACCAGACAGAAGTAGCACG 42868 | ||||||||||||||||| Sbjct 443 ATCAGACAGAAGTAGCACG 425 >seq19165 Length=1007 Score = 125 bits (138), Expect = 2e-24 Identities = 86/97 (89%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 30067 TTTTGCTGCTTCCAGCTCAACTCGCAGCTTCCCAACCGTAAGCGCAATATCCTCGTTCTC 30126 |||||||| ||| |||||||| ||||| ||||| || || |||||||||||||||||||| Sbjct 431 TTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTC 372 Query 30127 CTGGTCGCGGAGTTTGATGTATTGCTGTTTTTTATCC 30163 |||||||||| |||||||||||||||| ||| | ||| Sbjct 371 CTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCC 335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149815252148184