Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq7792 132 5e-26 seq13914 84.2 2e-11 >seq7792 Length=27931 Score = 132 bits (146), Expect = 5e-26 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTT 21557 |||| ||||| ||||||||| ||| || || || || ||||||| |||| ||||| Sbjct 19175 CTTCGTCCCTTGATATTAATTCGTTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTT 19234 Query 21558 TTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATG 21617 | | ||||||||||| ||||| |||||||||||| ||||| || ||||||||||| | Sbjct 19235 TAAGCCAAAATATTGCAGCAAAACTTCCTGAAAAGAAGATGCCTTCGACGGCAGCAAACG 19294 Query 21618 CAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTG 21677 | | | | ||| || | |||| | |||||| ||||||||| ||||| | || Sbjct 19295 CTATGATCCTTTCTCCAAAAGTAGCATTTTTATCAGCTATCCATTTCAACGCCCAGTCTG 19354 Query 21678 CCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAG 21720 | || | |||| |||| ||||| |||||||| || || || Sbjct 19355 CTTTCTTCTTAACACAAGGCATTGTTTCAATAGCATTGAACAG 19397 Score = 91.5 bits (100), Expect = 2e-13 Identities = 120/165 (73%), Gaps = 6/165 (4%) Strand=Plus/Plus Query 21109 CTTTATAAAAATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttt 21168 ||||| ||||||||| |||||||||| || ||| ||| |||| || | | Sbjct 18647 CTTTA-AAAAATATT-----AAAAATCAGCGTCCAATTTGAATTCATTCTCACCGGATGG 18700 Query 21169 tGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCC 21228 |||||| ||| |||| | ||| || | |||||| |||||||| ||||| || || || Sbjct 18701 GAACATAACTCCACTTTTCTTATATTCTCCAACTCTCTTTTCGAAGAAATTCGTTTTACC 18760 Query 21229 TTCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTT 21273 | ||| |||||| |||||||||||| || || || ||||| || Sbjct 18761 ATTCAAGGATATATTTTCCATAAAATCGAAAGGGTTCTCAGAGTT 18805 >seq13914 Length=11729 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/142 (74%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 || |||||||| ||||||| ||| || || | || ||||||||||||||| |||| || Sbjct 8226 CTGTACATTTCTGAATGTACATTCTCAATTGTGATTTGAAATCCGTAAAAAAATCTGGCT 8285 Query 21827 TCTGAACATTGAAC--CTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCAT 21884 || | | ||| || || ||| |||| || | | || |||||||| || || |||| Sbjct 8286 TCAGGAATTTGTACTTCTTGGA--AAAAACGCTCGACTAAATTTTCATTAACGATACCAT 8343 Query 21885 CACTGGCGGCAAAAAATGCCAA 21906 || ||| || |||||||| || Sbjct 8344 CAGAGGCAGCGAAAAATGCTAA 8365 Score = 82.4 bits (90), Expect = 8e-11 Identities = 154/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTT 21557 |||| || || |||||||||||| || || | || ||||||| || || |||| Sbjct 7886 CTTCGTCTCTTGATATTAATTCATTGCTGAAAGTCAGTCCAGGCATTAGGCCCCTTTTTT 7945 Query 21558 TTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATG 21617 | | ||||||||| | ||||| ||| ||||||||||| || || || |||||||| | Sbjct 7946 TAAGCCAAAATATCGCAGCAAAACTTCCAGAAAAGAAAATACCTTCGACAGCAGCAAAAG 8005 Query 21618 CAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTG 21677 | | | || ||| || | || | | ||| || |||||| || ||||| | | Sbjct 8006 CTATGATTCTTTCTCCAAAAGTCGCGTTTTTGTCATTTATCCACTTCAACGCCCAGTCAG 8065 Query 21678 CCTTTTCT-TTAATACAATCAATTGTATCAATAGCTTTTAAAAG 21720 ||||||| |||| ||| || || ||||| || || || || Sbjct 8066 -CTTTTCTCTTAACACACGGCATGGTTTCAATGGCATTGAATAG 8108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531366332778640