Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq7792 132 5e-26
seq13914 84.2 2e-11
>seq7792
Length=27931
Score = 132 bits (146), Expect = 5e-26
Identities = 163/223 (73%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTT 21557
|||| ||||| ||||||||| ||| || || || || ||||||| |||| |||||
Sbjct 19175 CTTCGTCCCTTGATATTAATTCGTTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTT 19234
Query 21558 TTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATG 21617
| | ||||||||||| ||||| |||||||||||| ||||| || ||||||||||| |
Sbjct 19235 TAAGCCAAAATATTGCAGCAAAACTTCCTGAAAAGAAGATGCCTTCGACGGCAGCAAACG 19294
Query 21618 CAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTG 21677
| | | | ||| || | |||| | |||||| ||||||||| ||||| | ||
Sbjct 19295 CTATGATCCTTTCTCCAAAAGTAGCATTTTTATCAGCTATCCATTTCAACGCCCAGTCTG 19354
Query 21678 CCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAG 21720
| || | |||| |||| ||||| |||||||| || || ||
Sbjct 19355 CTTTCTTCTTAACACAAGGCATTGTTTCAATAGCATTGAACAG 19397
Score = 91.5 bits (100), Expect = 2e-13
Identities = 120/165 (73%), Gaps = 6/165 (4%)
Strand=Plus/Plus
Query 21109 CTTTATAAAAATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttt 21168
||||| ||||||||| |||||||||| || ||| ||| |||| || | |
Sbjct 18647 CTTTA-AAAAATATT-----AAAAATCAGCGTCCAATTTGAATTCATTCTCACCGGATGG 18700
Query 21169 tGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCC 21228
|||||| ||| |||| | ||| || | |||||| |||||||| ||||| || || ||
Sbjct 18701 GAACATAACTCCACTTTTCTTATATTCTCCAACTCTCTTTTCGAAGAAATTCGTTTTACC 18760
Query 21229 TTCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTT 21273
| ||| |||||| |||||||||||| || || || ||||| ||
Sbjct 18761 ATTCAAGGATATATTTTCCATAAAATCGAAAGGGTTCTCAGAGTT 18805
>seq13914
Length=11729
Score = 84.2 bits (92), Expect = 2e-11
Identities = 105/142 (74%), Gaps = 4/142 (3%)
Strand=Plus/Plus
Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826
|| |||||||| ||||||| ||| || || | || ||||||||||||||| |||| ||
Sbjct 8226 CTGTACATTTCTGAATGTACATTCTCAATTGTGATTTGAAATCCGTAAAAAAATCTGGCT 8285
Query 21827 TCTGAACATTGAAC--CTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCAT 21884
|| | | ||| || || ||| |||| || | | || |||||||| || || ||||
Sbjct 8286 TCAGGAATTTGTACTTCTTGGA--AAAAACGCTCGACTAAATTTTCATTAACGATACCAT 8343
Query 21885 CACTGGCGGCAAAAAATGCCAA 21906
|| ||| || |||||||| ||
Sbjct 8344 CAGAGGCAGCGAAAAATGCTAA 8365
Score = 82.4 bits (90), Expect = 8e-11
Identities = 154/224 (69%), Gaps = 2/224 (1%)
Strand=Plus/Plus
Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTT 21557
|||| || || |||||||||||| || || | || ||||||| || || ||||
Sbjct 7886 CTTCGTCTCTTGATATTAATTCATTGCTGAAAGTCAGTCCAGGCATTAGGCCCCTTTTTT 7945
Query 21558 TTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATG 21617
| | ||||||||| | ||||| ||| ||||||||||| || || || |||||||| |
Sbjct 7946 TAAGCCAAAATATCGCAGCAAAACTTCCAGAAAAGAAAATACCTTCGACAGCAGCAAAAG 8005
Query 21618 CAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTG 21677
| | | || ||| || | || | | ||| || |||||| || ||||| | |
Sbjct 8006 CTATGATTCTTTCTCCAAAAGTCGCGTTTTTGTCATTTATCCACTTCAACGCCCAGTCAG 8065
Query 21678 CCTTTTCT-TTAATACAATCAATTGTATCAATAGCTTTTAAAAG 21720
||||||| |||| ||| || || ||||| || || || ||
Sbjct 8066 -CTTTTCTCTTAACACACGGCATGGTTTCAATGGCATTGAATAG 8108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531366332778640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |