Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq13914 149 8e-31 seq7792 136 5e-27 seq59517 123 3e-23 seq19381 123 3e-23 >seq13914 Length=11729 Score = 149 bits (164), Expect = 8e-31 Identities = 166/221 (75%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 |||||||| |||| ||| ||| || || ||||| ||||||||||| | |||||| Sbjct 7888 TCGTCTCTTGATATTAATTCATTGCTGAAAGTCAGTCCAGGCATTAGGCCCCTTTTTTTA 7947 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33447 ||||||||||| | ||| || |||||||||||| || ||||| || |||||||| || Sbjct 7948 AGCCAAAATATCGCAGCAAAACTTCCAGAAAAGAAAATACCTTCGACAGCAGCAAAAGCT 8007 Query 33448 ATAAGTCTCTCTCCATAACCGGCG---CTGTCATGTATCCACTTTTGAGCCCAATCGGCC 33504 || | ||| |||||| || ||| |||||| ||||||||| ||||| || || Sbjct 8008 ATGATTCTTTCTCCAAAAGTCGCGTTTTTGTCATTTATCCACTTCAACGCCCAGTCAGCT 8067 Query 33505 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33545 || | || ||||| ||||| ||||| |||||||| || || Sbjct 8068 TTTCTCTTAACACACGGCATGGTTTCAATGGCATTGAATAG 8108 Score = 122 bits (134), Expect = 1e-22 Identities = 162/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||||| ||||| || ||||| | || |||||||| ||||| | || ||||| | Sbjct 8198 ATCTTTAATGTAAGTGTCAATCAACAAGCTGTACATTTCTGAATGTACATTCTCAATTGT 8257 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || ||||||||||| ||| |||| || || | ||| ||||||||| |||| || || Sbjct 8258 GATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATTTGTACTTCTTGGAAAAAACGCTC 8317 Query 33684 CGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 33743 | ||||||||||| || || || ||| ||| || ||||| || || || || || Sbjct 8318 GACTAAATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGGGAAAT 8377 Query 33744 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33788 || | || || || ||| | ||||| | |||||| ||| ||| Sbjct 8378 GAATTTCTTCTCTTCGGGTTTCAGTTTTTCCCAATCTCTGAAATC 8422 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191 ||||||||| || || ||||| ||||| |||||||| | ||||| |||||||| || | Sbjct 7615 CAATCTATCAGCTACAAATTCAATATACGTTTTCATTAATTCACTGTTCATTCCAATCAT 7674 Query 33192 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 33251 || || | ||| |||| | |||||||||||||||| || || || ||||| Sbjct 7675 CGATACGGGCAAAGCATCAGTCAAAAATTCTTGTTCAATGATAACGGCGTCACGAATAAT 7734 Query 33252 AGATCTAACGGTTTCTT---CACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGC 33308 | | |||||| |||| ||| || | |||||||| |||||||| || || Sbjct 7735 ---TTCGGTGATTTCTTCAACACTGGGTTTTTGAACCAAATGTTTGAACATCAAGCAAGC 7791 Query 33309 GAAATCGCAGTGCAGACCCT 33328 |||||| || | ||||| Sbjct 7792 AAAATCGGTATGTAAACCCT 7811 >seq7792 Length=27931 Score = 136 bits (150), Expect = 5e-27 Identities = 156/209 (75%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 33340 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33399 |||| |||||| || || | ||| ||||||||||| |||||||||||||||||||| Sbjct 19189 ATTAATTCGTTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTTTAAGCCAAAATATT 19248 Query 33400 GAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCT 33459 | ||| || ||| ||||||||||| ||||| || |||||||| || || | || ||| Sbjct 19249 GCAGCAAAACTTCCTGAAAAGAAGATGCCTTCGACGGCAGCAAACGCTATGATCCTTTCT 19308 Query 33460 CCATAACCGGC---GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 33516 ||| || || | ||| |||||| || ||||| || || ||||| || ||| Sbjct 19309 CCAAAAGTAGCATTTTTATCAGCTATCCATTTCAACGCCCAGTCTGCTTTCTTCTTAACA 19368 Query 33517 CAAGGCATCGTTTCTATGGCATTAAAGAG 33545 |||||||| ||||| || ||||| || || Sbjct 19369 CAAGGCATTGTTTCAATAGCATTGAACAG 19397 Score = 125 bits (138), Expect = 9e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 33555 TTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33614 |||| || ||| || || || || || ||||| | ||| |||||||| ||||||| || Sbjct 19476 TTCAGTAGGATCCTTGACGTATGTGTCTATCAATAAACTGTACATTTCTGAATGAACATT 19535 Query 33615 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 33674 || |||| ||||||||||||||||| ||||||| |||| || || |||||| | | Sbjct 19536 CTCTATGGTGATCTGAAATCCGTAGAAGAATCTAGCTTCGGGGATTTGAACTTCTTGAAA 19595 Query 33675 AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 33734 || || || | |||||||||||||| || |||||| || || ||||| || | || Sbjct 19596 GAAGCGCTCGACTAAATTTTCATTCACGATACCGTCAGATGCGGCGAAAAATGCAAGAAC 19655 Query 33735 ATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33788 || || || | || || || ||| | ||||| | ||| || ||| ||| Sbjct 19656 GTGCGAAATGAACTTCTTCTCTTCGGGTTTCAGTTTCTCCCAGTCTCTGAAATC 19709 Score = 86.0 bits (94), Expect = 8e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 33800 CTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCAT 33859 |||||||||| ||||||||||||| || |||||||||||| ||||| ||| || |||| Sbjct 19789 CTACTTCTTCAGCTGTCCAAAATGAAGCTTCTGCCTTTTTAAACATGGCCCAAATATCAT 19848 Query 33860 AATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGG 33899 |||| ||||| | || ||||||||| ||||| || Sbjct 19849 CGTATTTAATTGGCATTATTACAAATCTACGAGGATTAGG 19888 >seq59517 Length=19559 Score = 123 bits (136), Expect = 3e-23 Identities = 139/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395 ||| ||||||||||||||||| |||| | ||| || || || ||||| ||||| | Sbjct 14730 TACCTGAAATTCTCCAGACAAGACTCGTCTAGTATACATGTTTGAAGTATAAGGTTCGAA 14671 Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455 || ||||||||||| |||||||||||||| || || || |||||||| || | | || Sbjct 14670 AGATTCATTATTTCCTAAAATTTGAGCAGTGGAAGCGGTAGGCATAGGAGCAAGAAGTAG 14611 Query 62456 ACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 62515 | |||||||| |||||| | | ||||| ||||||| | | ||||| ||| | ||| Sbjct 14610 AGAATTTCTAACGCCGTATTGTTTAATTTTTTCTTTTAACGATGTCCAATCCCATAAATC 14551 Query 62516 CGACGG 62521 || || Sbjct 14550 AGATGG 14545 Score = 102 bits (112), Expect = 1e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 63618 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63677 ||| | || | |||||| |||||||| || || || | || || | | || || || Sbjct 13019 GCACTGAAAAGGGTAGGCGAAGCGTGAGTGAAATATCTCTCCGATAACAAGTTATAAGTT 12960 Query 63678 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63737 ||||| |||| ||| ||||| |||||||||||| || || ||||| ||||| || Sbjct 12959 TCAATCGCTGCGTCGATATCTTCAGCATGAATTCCTACAGCAACTCGCATCAACATATGT 12900 Query 63738 TGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63793 || || | ||| || | || |||||||||||| || || |||||||||||||| Sbjct 12899 TGTGGGCGTTCTACAACTTTTCCGTTTATTTTCAATAAATACGATTTTTCCAAAGT 12844 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 62918 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGT 62977 |||||||| || | | ||||| | || ||||| || | |||||||| || ||||| Sbjct 13922 TACCTCATCAGGAGCACTATATTCGACGATTTCAGTACACAAATTACTACTTTTAATAGT 13863 Query 62978 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 63037 |||||||||||| ||||| ||| | ||||| ||||| || || | ||| | || || Sbjct 13862 TCCTAAATTTTGATGATTGGATTTTCTATTACAGGCATCTTTGTACAACATGTAAGGTGT 13803 Query 63038 ACCAGTTTCAATCTGAGATTCTATAATCGC 63067 || |||||||| ||||| |||| ||| || Sbjct 13802 TCCTGTTTCAATTTGAGAGTCTAAAATTGC 13773 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| |||||||| || | | ||||| | |||| || || || |||| Sbjct 15144 TCCAGCCGTAGAAATGCATCGAAGTCAAAGTCGAATAGTTTGGATTCGCCATGTGTATAT 15085 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | | ||| |||||| ||||| ||||| | || ||||||||||| | || || | Sbjct 15084 TTAAACTTTGCGATTGATCAATGAAAGCTCCACGATCGGCAGCCATTTTCAAGACGGTTT 15025 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 62230 ||||| ||||||||| | ||||||||| | ||| ||| | ||| ||||| Sbjct 15024 TTTGTTTAATTTCCCATACAGTTTTATACAGCTC-CTTCAAATCATCTGG 14976 >seq19381 Length=19756 Score = 123 bits (136), Expect = 3e-23 Identities = 140/186 (75%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 63616 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG--AAAGTAGATTGTA 63673 ||||||| ||||||||||||||||| || ||||| || |||||| | | || ||| || Sbjct 8694 CCGCATTGAATAAGGTAGGAGAAGCATGAGTAAA--ATATTTCAGGGACATTAAATTATA 8637 Query 63674 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63733 || |||||| | ||||| ||||| ||||| || || || || ||||| ||||| Sbjct 8636 GGTTTCAATAACAGAGTCGATATCTTCGCCGTGAATACCAACGGCAACTCGCATCAACAT 8577 Query 63734 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63793 |||||| || | ||| || || ||||| |||||||| | ||||||||||||| ||| Sbjct 8576 GTGCTGTGGACGTTCGACAATACGATTGTTGATTTTCAATAGATAGGATTTTTCCAGAGT 8517 Query 63794 TTTAAA 63799 | ||| Sbjct 8516 CTGAAA 8511 Score = 113 bits (124), Expect = 6e-20 Identities = 205/300 (68%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 63164 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 63223 |||||| ||||||| | ||||||||||| ||| | | | || | | || | | | Sbjct 9211 CAATCCGGGACATTGACTGGGACACATCAAACTCCATTTTTCATCTTTTTCGACCCTTCT 9152 Query 63224 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 63283 ||| || || || ||||| | || ||||| ||| || | | | || || || Sbjct 9151 CATGAATTCGTCGGGGATCCACATTGCGTAAAATAAATCCCTAGCGCGAGACTCTTCTTT 9092 Query 63284 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63343 || | ||| ||| || || | || | | |||||| | |||||| ||||||||||| Sbjct 9091 ACCAGAATTTTTTCGCAGCTCTAAAAATTCAAAAATATCCGCATGCCAAGGTTCCAAGTA 9032 Query 63344 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63403 || || | | | || || | |||||| ||||| || || | |||||| || |||||||| Sbjct 9031 AATAGCAAAAGCACCCGGTCTTTTGTTGCCTCCTTGGTCCACGTATCTGGCTGTGTTATT 8972 Query 63404 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCT 63463 || || | | ||| ||||| | ||| ||||||| || || || || | ||||||||| Sbjct 8971 GTATACGCGAAGCATCGGAATTAGACCATTTGATACGCCGTTTGTTCCAGCGATATAGCT 8912 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 62553 CCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCA 62612 || |||||| | ||| ||| | || || | ||||| || | || | ||| ||||| Sbjct 10026 CCTTTACTGACTGGCGAACCTTCGTAGGTTTTATATGGACCGTATTTTTGAGCAAGTTCG 9967 Query 62613 CAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGT 62672 || ||||| ||||||||||||||||| | |||||| || |||| ||| || ||| Sbjct 9966 CAGCTCGCTTCTAATGCACCGTAATACAAGGTTTCAAAAATCTGTACATTAAGTAATTGC 9907 Query 62673 GCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACA 62732 | | ||| ||||||||| | | | ||||| ||| ||||||||||||| | Sbjct 9906 GACTGTTCGCTTTCAAATGGAAGTCTCATCAAGATAAATAGGTCGGCTAATCCTTGAATA 9847 Query 62733 CCAATACCGATAGGTCTATG 62752 || || || || |||||||| Sbjct 9846 CCTATTCCAATCGGTCTATG 9827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622321247079760