Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq54470 141 2e-28 seq19381 100 7e-16 >seq54470 Length=54847 Score = 141 bits (156), Expect = 2e-28 Identities = 248/353 (70%), Gaps = 10/353 (3%) Strand=Plus/Minus Query 111488 AGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAAC 111547 ||| |||||||| |||||||||||||| |||||| | ||||| || || || |||||| Sbjct 48714 AGGCGATCTCGGTCCAGTTTACGGATTCCAATGGAGACACTTCGGAGCTGAGTACAAAGA 48655 Query 111548 CATGCACGACTCATA-TGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAA 111606 ||||||| | || | || ||| | | |||||| | || |||||||||||| | Sbjct 48654 TATGCACGCCGATTACTCCAACAAAGGCATC-GATCAACTGCAAAATGTCATTGATACCA 48596 Query 111607 TTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGG 111666 |||| || ||||| | | | || ||| | | || ||||| || | || Sbjct 48595 TTAAAAATAACCCCGACGATAGAAGAATAATTTTATGCGCTTGGAATCCGTTAGATTTAC 48536 Query 111667 AAAAAATGGCACTTCCACCATGTCA-TCTTATGTGCCAGTTTTA---TGTACACGACGGG 111722 || ||||| || || || ||||| | || |||| ||||||| ||| | | || Sbjct 48535 CCAAGATGGCCCTACCTCCTTGTCACTGTTTAGTGC-AGTTTTACGCTGTTAATGGCGA- 48478 Query 111723 ATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAAT 111782 || | || || ||||||||||| || ||||| ||||| ||| | || || || |||||| Sbjct 48477 AT--TATCGTGTCAAATGTATCAACGTTCTGCCGATATGGGTTTAGGAGTACCTTTTAAT 48420 Query 111783 ATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAA 111835 || || |||||| | ||||| |||| | | ||||| ||| |||| |||| ||| Sbjct 48419 ATCGCCAGTTACTCCCTACTCACTTACATGATCGCACATGTTACTAATCACAA 48367 >seq19381 Length=19756 Score = 100 bits (110), Expect = 7e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 364117 AAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTAC 364176 ||||| |||||||| || | || || || || || |||||||| || |||||||||||| Sbjct 9360 AAGCTTTGGTTTGCTATATTAGACTCTCAAATAGAAACAGGAACGCCTTATATGTTGTAC 9419 Query 364177 AAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAAC 364236 |||||| | || || || || |||||||| | | ||||| || ||| | |||||| Sbjct 9420 AAAGATGCCTGTAATCGTAAATCCAACCAAAAAAATCTTGGAACTATTAAAAGTAGCAAC 9479 Query 364237 CTATGTACCGAGATTATTGAATA 364259 || ||||| || || || ||||| Sbjct 9480 CTGTGTACGGAAATCATGGAATA 9502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302011216661852