Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq28572 89.7 4e-13 seq63578 87.8 1e-12 >seq28572 Length=14732 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | || |||| ||| | || || || ||||| |||||||| |||| Sbjct 2517 CCTCCTCGGAGACGGAGAACCAAATGTAATGTCGATTCTTTTTGGATGTTGTAATCGGAA 2576 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| || | |||||| || || |||| | || ||||| || || Sbjct 2577 AGAGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGTTGATCAGGGGGA 2636 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| || || ||||| ||| || | | | ||||| | |||||| | Sbjct 2637 ATTCCCTCCTTATCCTGAATTTTAGCCTTGACATTTTCGATGGTGTCACTGGGCTCTACT 2696 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||||| || || | |||||||| ||||||||||| Sbjct 2697 TCGAGAGTGATGGTTTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 2743 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || | || |||| ||| | || || || ||||| ||||| ||||| | Sbjct 2973 CCTCCTCTGAGACGGAGAACCAAATGTAAAGTAGATTCTTTTTGGATGTTATAGTCCGAA 3032 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || || | |||||| || || |||| || || || |||||| ||| Sbjct 3033 AGTGTTCTACCATCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGG 3092 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| ||||| || ||||| ||| || | | | ||||||| ||||| | Sbjct 3093 ATGCCTTCTTTATCCTGAATTTTTGCCTTGACGTTTTCAATCGTGTCGCTAGGCTCGACT 3152 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||||| ||||| | ||||| || || |||||||| Sbjct 3153 TCGAGAGTGATGGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 3199 >seq63578 Length=26733 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 16727 ACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCC 16786 |||| ||| || ||||| |||||||| || ||||| ||| | || | |||| ||| Sbjct 11840 ACCAAATGTAGGGTGGATTCCTTTTGGATATTGTAATCGCTTAACGTGCGGCCGTCTTCC 11899 Query 16787 AATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCA 16846 |||||||| || || |||| | ||||| ||||| || | || |||||||| | Sbjct 11900 AATTGTTTACCGGCGAAAATTAATCGCTGCTGGTCGGGTGGAATACCTTCTTTGTCTTGA 11959 Query 16847 A--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTT 16904 | || ||| || || | | | || ||| ||||| ||||| ||||| |||| Sbjct 11960 ATCTTGGCT--TTAACATTCTCGATTGTATCGGATGGCTCTACTTCCAACGTGATAGTTT 12017 Query 16905 TTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| |||||||| || ||||| ||||| Sbjct 12018 TACCGGTGAGCGTTTTTACGAAAATTTGCAT 12048 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | | || | ||| || ||||| || ||||| || || || ||| | Sbjct 12278 CCACCTCGAAGACGTAAAACTAAATGAAGAGTGGATTCTTTTTGGATATTATAATCGCTC 12337 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| |||| ||||||||||| || || |||| | | ||| ||||| || Sbjct 12338 AAGGTACGACCGTCTTCCAATTGTTTACCGGCGAAAATTAATCTCTGCTGGTCGGGTGGG 12397 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| ||||| ||| ||||| | | | ||| || || ||| Sbjct 12398 ATGCCTTCTTTGTCTTGAATTTTGGCT--TTCACGTTTTCAATAGTATCAGACGGTTCCA 12455 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGT--TTTGACAAAAATCTGCAT 16935 ||||| |||||| ||||||||||| ||||| |||| |||||| ||||| Sbjct 12456 CTTCCAAGGTGATAGTTTTTCCGGTTAGCGTAATTTG--AAAAATTTGCAT 12504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404691133514140