Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq7792 163 3e-35 seq13914 150 2e-31 seq47148 134 2e-26 seq11648 132 5e-26 seq66206 127 2e-24 >seq7792 Length=27931 Score = 163 bits (180), Expect = 3e-35 Identities = 177/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 ||||||| | |||||| || || || ||||| || || || || | || ||||| || | Sbjct 19175 CTTCGTCCCTTGATATTAATTCGTTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTT 19234 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 | ||||||||||||| ||||||||| || ||||| || || ||||| ||||| ||||| | Sbjct 19235 TAAGCCAAAATATTGCAGCAAAACTTCCTGAAAAGAAGATGCCTTCGACGGCAGCAAACG 19294 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTA-CTGCTGATCCATTTTAAAGCCCAATCG 93292 | | || | ||| ||||| | || ||| | ||| |||||||| || ||||| || Sbjct 19295 CTATGATCCTTTCTCCAAAAGTAGCATTTTTATCAGCT-ATCCATTTCAACGCCCAGTCT 19353 Query 93293 GCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 ||||| ||||||| |||||| | |||||| ||||| || || ||| |||||| Sbjct 19354 GCTTTCTTCTTAACACAAGGCATTGTTTCAATAGCATTGAACAGGAAATCTC 19405 Score = 125 bits (138), Expect = 8e-24 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 93359 CGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATT 93418 ||||||| | |||| || ||| | |||||||| ||||| |||||||| || | || Sbjct 19493 CGTATGTGTCTATCAATAAACTG----TACATTTCTGAATGAACATTCTCTATGGTGATC 19548 Query 93419 TGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACG 93478 || ||||||||||| |||||||||| | ||| || ||||||||| | || | ||| || Sbjct 19549 TGAAATCCGTAGAAGAATCTAGCTTCGGGGATTTGAACTTCTTGAAAGAAGCGCTCGACT 19608 Query 93479 AGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAA 93538 | ||||||||| || ||||| || ||||| || ||||| || | | ||| || || Sbjct 19609 AAATTTTCATTCACGATACCGTCAGATGCGGCGAAAAATGCAAGAACGTGCGAAATGAAC 19668 Query 93539 TGTTTCTCATCATCTTTAAGCTTATCCCAATC 93570 | ||||| || ||| || || ||||| || Sbjct 19669 TTCTTCTCTTCGGGTTTCAGTTTCTCCCAGTC 19700 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/201 (71%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 ||| |||||||||||||||||||| ||||| ||| || || | ||||||||| | Sbjct 18908 CAACAATCTATCAGCTACAAATTCAATGTAAGTCTTCATTAATTCGCTATTCATTCCAAT 18967 Query 92977 AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAA 93036 | ||| |||| ||| || ||||| || |||| |||||| |||| || || | Sbjct 18968 CATCGATACGGGTAAAGCCTCTGTCAAAAATTCTTGTTCGATTGCAACAGCGTCACGAAT 19027 Query 93037 GATTTC---TATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCA 93093 ||||| ||| || | | | ||||||||| | | || ||| |||||||||| Sbjct 19028 AATTTCGGTAATTTCTTCAACACT---TGGTTTTTGAATCAAATGTTTGAACATTAAGCA 19084 Query 93094 CGCAAAGTCGGTATGTAAACC 93114 ||||| |||||||||||||| Sbjct 19085 GGCAAAATCGGTATGTAAACC 19105 >seq13914 Length=11729 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 ||||||||| |||||| || ||||||||||| || | || || | || || | ||| | Sbjct 7886 CTTCGTCTCTTGATATTAATTCATTGCTGAAAGTCAGTCCAGGCATTAGGCCCCTTTTTT 7945 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 | ||||||||||| | ||||||||| |||||||| || |||||||| || || ||||| | Sbjct 7946 TAAGCCAAAATATCGCAGCAAAACTTCCAGAAAAGAAAATACCTTCGACAGCAGCAAAAG 8005 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGG 93293 | | || | ||| ||||| | ||| || | ||||| || || ||||| || | Sbjct 8006 CTATGATTCTTTCTCCAAAAGTCGCGTTTTTGTCATTTATCCACTTCAACGCCCAGTCAG 8065 Query 93294 CTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 ||||| |||||| ||| || | ||||| || || || |||||| |||||| Sbjct 8066 CTTTTCTCTTAACACACGGCATGGTTTCAATGGCATTGAATAGGAAATCTC 8116 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 92918 AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 || |||||||||||||||||||| || ||| ||| || |||| |||||||| | Sbjct 7613 AACAATCTATCAGCTACAAATTCAATATACGTTTTCATTAATTCACTGTTCATTCCAATC 7672 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 | ||| || | ||| || ||||| || |||| || || | |||||| || | Sbjct 7673 ATCGATACGGGCAAAGCATCAGTCAAAAATTCTTGTTCAATGATAACGGCGTCACGAATA 7732 Query 93038 ATTTCTATTA-CTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096 ||||| | | ||| | | | |||||||| || | || ||| |||| ||||| || Sbjct 7733 ATTTCGGTGATTTCTTCAACACTG-GGTTTTTGAACCAAATGTTTGAACATCAAGCAAGC 7791 Query 93097 AAAGTCGGTATGTAAACC 93114 ||| |||||||||||||| Sbjct 7792 AAAATCGGTATGTAAACC 7809 >seq47148 Length=8225 Score = 134 bits (148), Expect = 2e-26 Identities = 82/86 (95%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 663 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGAGCG 722 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||||||| Sbjct 723 TGGGTTCGAACCCCACACCTGACAAA 748 >seq11648 Length=2834 Score = 132 bits (146), Expect = 5e-26 Identities = 81/85 (95%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 978 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCCAACGGGAGCG 919 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||| Sbjct 918 TGGGTTCGAACCCCACACCTGACAA 894 >seq66206 Length=1910 Score = 127 bits (140), Expect = 2e-24 Identities = 79/84 (94%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||| Sbjct 719 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGAGCG 778 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||| Sbjct 779 TGGGTTCGAACCCCACACCTGACA 802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556301252346640