Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq63578 154 1e-32 seq28572 136 3e-27 seq46443 109 5e-19 seq77090 105 6e-18 >seq63578 Length=26733 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| |||||||| | |||||||||||| | |||||| ||||| ||||||||||| ||| Sbjct 12047 ATACCACCACGTAGACGCAAAACTAAATGCAGCGTAGACTCTTTCTGAATGTTGTAGTCG 12106 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| ||||||| |||||| | ||||||||| ||| | || | | || ||||| || Sbjct 12107 CTCAAAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATTAATCTTTGCTGGTCGGGT 12166 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || |||||||| || || ||| ||||| | ||| | ||||| | | |||| Sbjct 12167 GGGATACCTTCTTTATCTTGGATTTTTGCTTTTACATTTTCGATTGTGTCAGATGGTTCG 12226 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || || ||||| || ||||| ||||| Sbjct 12227 ACTTCTAACGTGATAGTTTTTCCAGTGAGCGTTTTAACGAAAATTTGCAT 12276 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||||| ||| | || || || | || |||||||| |||||||| ||||| Sbjct 11591 ATTCCACCACGTAATCTGAGTACCAAGTGAAGAGTGGATTCTTTCTGAATGTTATAATCA 11650 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| |||||| |||||| | |||||||| || |||| | || || ||||| || Sbjct 11651 CTCAGAGTACGGCCATCTTCCAACTGTTTACCGGCAAAGATCAATCGTTGCTGGTCTGGT 11710 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||||||||| || ||| || ||| | | ||||| ||| |||| | ||| Sbjct 11711 GGTATGCCTTCTTTATCCTGAATTTTAGCTTTGACATTTTCAATGGTATCGGACGGTTCC 11770 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| || || || ||||| || ||||| ||||| Sbjct 11771 ACCTCCAAGGTTATGGTTTTTCCAGTGAGCGTTTTAACGAAAATTTGCAT 11820 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || | ||||||||||| | || ||||||||||| || || |||||| Sbjct 12275 ATTCCACCTCGAAGACGTAAAACTAAATGAAGAGTGGATTCTTTTTGGATATTATAATCG 12334 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| |||||| ||||| | ||||||||| ||| | || | | ||| ||||| || Sbjct 12335 CTCAAGGTACGACCGTCTTCCAATTGTTTACCGGCGAAAATTAATCTCTGCTGGTCGGGT 12394 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||||||||| ||| || ||| | | ||||| || || | | ||| Sbjct 12395 GGGATGCCTTCTTTGTCTTGAATTTTGGCTTTCACGTTTTCAATAGTATCAGACGGTTCC 12454 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| ||||| || || || |||||| ||||| Sbjct 12455 ACTTCCAAGGTGATAGTTTTTCCGGTTAGCGTAATTTGAAAAATTTGCAT 12504 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 |||||||| || || | | || ||||| | ||| |||||||||||||| ||||| ||| Sbjct 12503 ATACCGCCGCGAAGACGTAGGACCAAATGAAGCGTCGATTCTTTTTGAATATTGTAGTCG 12562 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| || || |||||| | ||||||||| || | || | || || ||||| || Sbjct 12563 CTCAATGTGCGGCCATCTTCCAATTGTTTACCGGCAAAAATTAACCGTTGCTGGTCAGGT 12622 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || |||||||| || |||||| ||| | | ||| | || |||| | ||| Sbjct 12623 GGGATTCCTTCTTTATCTTGAATCTTGGCTTTGACGTTTTCGATCGTATCGGATGGTTCA 12682 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| ||||| ||||||||||| || || ||||| Sbjct 12683 ACTTCCAAAGTAATGGTTTTTCCGGTAAGAGTTTTTACGAAGATTTGCAT 12732 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || || ||||||| || ||||| ||||| || ||||||||| Sbjct 11819 ATACCACCGCGAAGACGTAAGACCAAATGTAGGGTGGATTCCTTTTGGATATTGTAATCG 11878 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | || || ||||| | ||||||||| ||| | || | ||||| ||||| || Sbjct 11879 CTTAACGTGCGGCCGTCTTCCAATTGTTTACCGGCGAAAATTAATCGCTGCTGGTCGGGT 11938 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| |||||| ||| | | || | || |||| | || Sbjct 11939 GGAATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTCTCGATTGTATCGGATGGCTCT 11998 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| ||||| || |||||||| ||||| ||||| Sbjct 11999 ACTTCCAACGTGATAGTTTTACCGGTGAGCGTTTTTACGAAAATTTGCAT 12048 >seq28572 Length=14732 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| ||||||| |||||||||||||| ||||| || || | || | | |||||| Sbjct 2990 AACCAAATGTAAAGTAGATTCTTTTTGGATGTTATAGTCCGAAAGTGTTCTACCATCTTC 3049 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||||||||||| ||| | || ||||| || ||||||||||| ||||||||||| || Sbjct 3050 GAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGGATGCCTTCTTTATCCTG 3109 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||| ||| || | | ||||| |||||| | | ||||| || | || | ||||| Sbjct 3110 AATTTTTGCCTTGACGTTTTCAATCGTGTCGCTAGGCTCGACTTCGAGAGTGATGGTTTT 3169 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||||| | |||||||| || |||||||| Sbjct 3170 GCCGGTTAAGGTTTTTACGAAGATCTGCAT 3199 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| |||| ||| || ||||| | ||| || ||||| || || |||||||| Sbjct 1605 CCACCACGAAGTCGCAACACCAAATGCAGCGTCGACTCTTTCTGGATATTGTAATCCGAA 1664 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||| | | ||||||||| || || || ||| | || | ||| || || || ||||| Sbjct 1665 AGAGTTCTACCATCTTCAAGCTGCTTTCCGGCGAAAATTAAACGTTGCTGATCGGGAGGG 1724 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || ||||||||||| ||||| || | | ||| | ||||||| | | |||||| Sbjct 1725 ATTCCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCGCTAGGTTCGACT 1784 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | |||||| ||||||| || || || || || ||||| Sbjct 1785 TCGAGAGTAATCGTTTTACCGGTCAAGGTCTTAACGAAGATTTGCAT 1831 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| ||||||| || ||||||||||| |||||||||||| | ||| || ||||| Sbjct 2534 AACCAAATGTAATGTCGATTCTTTTTGGATGTTGTAATCGGAAAGAGTTCGGCCGTCTTC 2593 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||||||||||| ||| | || | ||| ||||| || || ||||| || || || || Sbjct 2594 GAGTTGTTTACCGGCGAAAATTAAACGTTGTTGATCAGGGGGAATTCCCTCCTTATCCTG 2653 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||| || || | | ||| | |||||| ||| || || || | || | ||||| Sbjct 2654 AATTTTAGCCTTGACATTTTCGATGGTGTCACTGGGCTCTACTTCGAGAGTGATGGTTTT 2713 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||||| || ||||||||||| Sbjct 2714 ACCAGTTAAGGTTTTGACGAAAATCTGCAT 2743 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 |||||||| | || ||||||||||| ||||| || || | ||| | |||||| Sbjct 2763 ACTAAATGAAGGGTCGATTCTTTTTGGATGTTATAGTCAGAGAGAGTTCTTCCATCTTCG 2822 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 |||||||| |||||| |||||||||| ||||| || || ||||| || ||||| || Sbjct 2823 AGTTGTTTGCCAGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCTTGT 2882 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 || || || | | ||||| |||||| | | || || || | || | |||||| Sbjct 2883 ATTTTGGCCTTGACGTTTTCAATAGTGTCGCTAGGCTCAACTTCGAGTGTAATCGTTTTA 2942 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || || || || || ||||| Sbjct 2943 CCAGTCAAGGTCTTGACGAAGATTTGCAT 2971 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 |||||||| | | || | |||||||| | || |||||||||||||| || ||||| Sbjct 1830 ATACCGCCTCTCAATCGGAGGACTAAATGAAGAGTCGATTCTTTTTGAATATTATAATCC 1889 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | ||||| |||||||| || ||| | |||||||| || ||||| ||| Sbjct 1890 GAGAGAGTTCTGCCGTCTTCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCTGGA 1949 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || || || || || || | | ||| | ||||| | | ||| Sbjct 1950 GGAATTCCCTCCTTATCTTGGATTTTGGCCTTGACATTTTCGATTGTGTCACTAGGCTCG 2009 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| || || | ||||| || ||||| ||||| Sbjct 2010 ACTTCGAGGGTGATTGTTTTACCTGTTAAGGTTTTGACGAAAATTTGCAT 2059 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||||||||| | || ||||||||||| ||||| || || | ||| | |||||| Sbjct 2306 AACTAAATGCAATGTCGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTTCCATCTTC 2365 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 |||||||||||||| |||| ||||| || || || || ||||| || || || || Sbjct 2366 GAGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCAGGGGGAATTCCCTCCTTATCTTG 2425 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||| || || | | ||| | ||||| | | ||||| || | || | ||||| Sbjct 2426 AATTTTGGCCTTGACATTTTCGATCGTGTCACTAGGCTCGACCTCGAGTGTGATAGTTTT 2485 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || || || ||||| ||||| Sbjct 2486 ACCAGTTAAGGTCTTGACGAAAATTTGCAT 2515 >seq46443 Length=17015 Score = 109 bits (120), Expect = 5e-19 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 114167 TCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGA 114226 |||||| |||||||| | |||||||||||||| ||||| |||||| | ||||| Sbjct 12706 TCTCAATACTAAATGCAGAGTAGATTCTTTTTGGATGTTATAATCGGAAAGGGTACGTCC 12765 Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 |||||| |||||||||||||| | || | ||| |||||||| |||||||||||| Sbjct 12766 ATCTTCGAGTTGTTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATGCCT 12820 >seq77090 Length=20911 Score = 105 bits (116), Expect = 6e-18 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 114171 AAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCT 114230 || |||||||||| ||| ||||||||||| ||||||||||| | ||| || |||| Sbjct 10617 AACACTAAATGTAACGTCGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCGTCCATCT 10558 Query 114231 TCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCT 114281 |||||||| ||||||||| | || | ||| ||||| || |||||||||||| Sbjct 10557 TCAAGTTGCTTACCAGCGAAAATCAAACGTTGTTGATCAGGAGGAATGCCT 10507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419722792490232