Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq54470 125 6e-24 >seq54470 Length=54847 Score = 125 bits (138), Expect = 6e-24 Identities = 231/339 (68%), Gaps = 0/339 (0%) Strand=Plus/Plus Query 20242 AGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCC 20301 ||||||||| || | ||| ||||| | ||||| || ||||| || |||||||| ||||| Sbjct 48375 AGTAACATGTGCGATCATGTAAGTGAGTAGGGAGTAACTGGCGATATTAAAAGGTACTCC 48434 Query 20302 CAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATA 20361 |||||||| || | || | ||||||| ||||| || | || || | | | | || Sbjct 48435 TAAACCCATATCGGCAGAACGTTGATACATTTGACACGATAATTCGCCATTAACAGCGTA 48494 Query 20362 AAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCA 20421 ||| || ||| ||||||| || || || |||||| | || || ||| ||||| Sbjct 48495 AAACTGCACTAAACAGTGACAAGGAGGTAGGGCCATCTTGGGTAAATCTAACGGATTCCA 48554 Query 20422 CGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGA 20481 || || | ||| ||||||||||||| || |||||||| || ||| | | | Sbjct 48555 AGCGCATAAAATTATTCTTCTATCGTCGGGGTTATTTTTAATGGTATCAATGACATTTTG 48614 Query 20482 CAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAA 20541 || ||| || | || | | | || || || | | || |||| | || || || Sbjct 48615 CAGTTGATCGATGCCTTTGTTGGAGTAATCGGCGTGCATATCTTTGTACTCAGCTCCGAA 48674 Query 20542 GTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCC 20580 ||| ||||| ||||| |||||||| || || | ||| || Sbjct 48675 GTGTCTCCATTGGAATCCGTAAACTGGACCGAGATCGCC 48713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440929297576240