Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq47235 102 6e-17 >seq47235 Length=6691 Score = 102 bits (112), Expect = 6e-17 Identities = 80/92 (87%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 114390 |||||||| |||||||||||||||| |||||||||||||| || ||| ||||||||||| Sbjct 5607 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGTGGGTACAATCTAAGGAAC 5666 Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATC 114422 || ||||||| || |||||| |||| ||| || Sbjct 5667 CATAACTGATTTAATGAGCCTTTCGCGGTTTC 5698 Score = 102 bits (112), Expect = 6e-17 Identities = 80/92 (87%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 115587 |||||||| |||||||||||||||| |||||||||||||| || ||| ||||||||||| Sbjct 5607 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGTGGGTACAATCTAAGGAAC 5666 Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATC 115619 || ||||||| || |||||| |||| ||| || Sbjct 5667 CATAACTGATTTAATGAGCCTTTCGCGGTTTC 5698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396673396229572