Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq28572 168 2e-36 seq52934 140 8e-28 seq63578 134 3e-26 >seq28572 Length=14732 Score = 168 bits (186), Expect = 2e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | | || ||| || | ||||| || |||||||||||| |||||||| | | Sbjct 2745 CCACCTCTCAATCGAAGGACTAAATGAAGGGTCGATTCTTTTTGGATGTTATAGTCAGAG 2804 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| ||||| | |||||| || |||||||| ||||| |||||| ||| Sbjct 2805 AGAGTTCTTCCATCTTCGAGTTGTTTGCCAGCGAAGATGAGACGTTGTTGATCGGGTGGA 2864 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| |||||||| || ||||| || || |||||||| |||| ||||| | || ||| Sbjct 2865 ATTCCCTCTTTATCTTGTATTTTGGCCTTGACGTTTTCAATAGTGTCGCTAGGCTCAACT 2924 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || ||||| || || |||| ||||||||||| || |||||| Sbjct 2925 TCGAGTGTAATCGTTTTACCAGTCAAGGTCTTGACGAAGATTTGCATT 2972 Score = 168 bits (186), Expect = 2e-36 Identities = 153/193 (79%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||||||||| || |||| ||||| || |||||||| | ||| ||||| ||||| Sbjct 3236 TTCCTTTTGGATATTGTAATCGGAAAGCGTTCGGCCGTCTTCGAGTTGCTTTCCAGCGAA 3295 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||||||| |||||| | || || ||||| ||||| || |||||||| || ||||| Sbjct 3296 GATCAGACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGAATTTTCGCCTTGACGTT 3355 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| |||| ||| |||||||| ||||| || || || |||| || || || Sbjct 3356 TTCGATCGTATCACTCGGTTCAACTTCGAGGGTGATGGTTTTACCAGTCAACGTTTTTAC 3415 Query 288462 GAATATCTGCATT 288474 ||| ||||||||| Sbjct 3416 GAAGATCTGCATT 3428 Score = 140 bits (154), Expect = 8e-28 Identities = 163/219 (74%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 288258 TCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCC 288317 || ||| |||||||| | || ||| ||||| ||||| || |||| ||| || || || Sbjct 2072 TCGAAGCACGAGATGTAAAGTTGATTCCTTTTGAATATTGTAATCGGAGAGGGTTCGGCC 2131 Query 288318 GTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTC 288374 ||||| | |||||| || || || || | ||| |||||| |||||| |||||||| Sbjct 2132 ATCTTCGAGTTGTTTGCCGGCAAAAATTAAACGTTGTTGA---TCTGGGGGAATTCCTTC 2188 Query 288375 TTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGT 288434 ||||| |||||||| || || |||||||| || | || || | ||||||||||| || Sbjct 2189 CTTATCTTGGATTTTAGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTACTTCGAGAGT 2248 Query 288435 GATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || || || || || || ||||| || ||||| Sbjct 2249 GATGGTTTTACCCGTTAGGGTTTTAACGAAGATTTGCAT 2287 Score = 140 bits (154), Expect = 8e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| |||||||| | || || | || ||||| | |||||| || ||||| Sbjct 3008 TTCTTTTTGGATGTTATAGTCCGAAAGTGTTCTACCATCTTCGAGTTGTTTACCGGCGAA 3067 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||||| || || ||||| |||||||||||||| ||||| || || ||||| Sbjct 3068 AATCAGACGTTGCTGGTCCGGAGGGATGCCTTCTTTATCCTGAATTTTTGCCTTGACGTT 3127 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||||| | || |||||||| ||||| || || ||||| | || || || Sbjct 3128 TTCAATCGTGTCGCTAGGCTCGACTTCGAGAGTGATGGTTTTGCCGGTTAAGGTTTTTAC 3187 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 3188 GAAGATCTGCAT 3199 Score = 136 bits (150), Expect = 9e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || ||||| | || || | ||| | || |||||||||||| || || |||| Sbjct 2516 TCCTCCTCGGAGACGGAGAACCAAATGTAATGTCGATTCTTTTTGGATGTTGTAATCGGA 2575 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || |||||||| | |||||| || ||||| || | ||| |||||| | || Sbjct 2576 AAGAGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGTTGATCAGGGGG 2635 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||| || |||||||| ||||| || || || ||||| || | || || | ||||| Sbjct 2636 AATTCCCTCCTTATCCTGAATTTTAGCCTTGACATTTTCGATGGTGTCACTGGGCTCTAC 2695 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||| ||||| || || || || | || |||||||| |||||||| Sbjct 2696 TTCGAGAGTGATGGTTTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 2743 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| | || | ||| | ||| ||||| |||||||| || || | Sbjct 1605 CCACCACGAAGTCGCAACACCAAATGCAGCGTCGACTCTTTCTGGATATTGTAATCCGAA 1664 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || ||||| | || ||||| ||||| || | ||| || ||| ||| Sbjct 1665 AGAGTTCTACCATCTTCAAGCTGCTTTCCGGCGAAAATTAAACGTTGCTGATCGGGAGGG 1724 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||||||||| || ||||| || || || |||||||| || | ||||| | ||| ||| Sbjct 1725 ATTCCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCGCTAGGTTCGACT 1784 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| || ||||||| ||||| ||||| || ||||| Sbjct 1785 TCGAGAGTAATCGTTTTACCGGTCAAGGTCTTAACGAAGATTTGCAT 1831 Score = 123 bits (136), Expect = 6e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| |||||||| | || || | ||| ||||| | |||||| || || || Sbjct 2324 TTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTTCCATCTTCGAGTTGTTTACCAGCAAA 2383 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| ||||| || ||| | || ||||| || ||||| || ||||| || || || || Sbjct 2384 GATAAGACGTTGCTGATCAGGGGGAATTCCCTCCTTATCTTGAATTTTGGCCTTGACATT 2443 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | || || | || || ||||| ||||| || || || || | |||||||| Sbjct 2444 TTCGATCGTGTCACTAGGCTCGACCTCGAGTGTGATAGTTTTACCAGTTAAGGTCTTGAC 2503 Query 288462 GAATATCTGCATT 288474 ||| || |||||| Sbjct 2504 GAAAATTTGCATT 2516 >seq52934 Length=6696 Score = 140 bits (154), Expect = 8e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 ||||||||||||| || |||| || || | || ||||| ||||| ||||| ||||||| Sbjct 3966 CTTTTTGGATATTGTAATCGGATAGAGTTCTACCATCTTCCAATTGCTTTCCGGCGAAGA 4025 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 ||| ||| || || ||||| ||||||||||| || ||||| ||||| || |||| Sbjct 4026 TCAAACGTTGCTGGTCGGGAGGGATACCTTCTTTATCTTGAATTTTAGCTTTTACATTTT 4085 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | |||| ||| | ||| |||||||| |||||||| || || || || || || |||| Sbjct 4086 CAATAGTATCCGAAGGTTCGACTTCGAGAGTGATCGTTTTACCCGTTAGGGTTTTCACGA 4145 Query 288464 ATATCTGCAT 288473 | |||||||| Sbjct 4146 AGATCTGCAT 4155 >seq63578 Length=26733 Score = 134 bits (148), Expect = 3e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 288243 ATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC 288302 |||||| || || || | | || | ||||| ||| || || || |||||||| || Sbjct 11362 ATGTCCGCCACGAAGACGCAAAACCAAATGAAGGGTGGACTCCTTCTGAATATTATAATC 11421 Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362 | | |||||| || ||||| ||||| ||||| ||||| |||| | ||| || | Sbjct 11422 GCTTAACGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCTCTGCTGGTCAGG 11481 Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||| ||||||||||| || ||||| ||||||||||| || || | |||| || ||| Sbjct 11482 CGGGATACCTTCTTTATCTTGAATTTTAGCTTTCACGTTCTCGATGGTATCGGACGGTTC 11541 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| | || || ||||| ||||| | ||| || ||||| || |||||| Sbjct 11542 GACTTCCAAGGTAATAGTCTTGCCGGTTAAAGTTTTCACGAAAATTTGCATT 11593 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | || || | ||||| ||| ||||||||| ||||| |||||| Sbjct 12506 CCGCCGCGAAGACGTAGGACCAAATGAAGCGTCGATTCTTTTTGAATATTGTAGTCGCTC 12565 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| |||||||| || || || || | || || || | |||| Sbjct 12566 AATGTGCGGCCATCTTCCAATTGTTTACCGGCAAAAATTAACCGTTGCTGGTCAGGTGGG 12625 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||||||||| || || || ||||| |||||||| || | |||| | ||| ||| Sbjct 12626 ATTCCTTCTTTATCTTGAATCTTGGCTTTGACGTTTTCGATCGTATCGGATGGTTCAACT 12685 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || || || || ||||| ||||| || ||||| || ||||| Sbjct 12686 TCCAAAGTAATGGTTTTTCCGGTAAGAGTTTTTACGAAGATTTGCAT 12732 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | | || | ||||| ||| |||||||||||||||||| ||| Sbjct 12277 TCCACCTCGAAGACGTAAAACTAAATGAAGAGTGGATTCTTTTTGGATATTATAATCGCT 12336 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || |||||||| |||||||| || ||||| || | | ||| || ||| Sbjct 12337 CAAGGTACGACCGTCTTCCAATTGTTTACCGGCGAAAATTAATCTCTGCTGGTCGGGTGG 12396 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| |||||||| || || ||||| |||||||||||||| |||| ||| || ||| || Sbjct 12397 GATGCCTTCTTTGTCTTGAATTTTGGCTTTCACGTTTTCAATAGTATCAGACGGTTCCAC 12456 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGT 288455 ||| | ||||| || || ||||| || || Sbjct 12457 TTCCAAGGTGATAGTTTTTCCGGTTAGCGT 12486 Score = 125 bits (138), Expect = 2e-23 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTC-TAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||||| || | |||| || | ||| | ||| ||| ||||||||||| || ||| Sbjct 11822 CCACCGCGAAGACGTAAG-ACCAAATGTAGGGTGGATTCCTTTTGGATATTGTAATCGCT 11880 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | |||||| |||||||| |||||||| || ||||| || | ||||| || ||| Sbjct 11881 TAACGTGCGGCCGTCTTCCAATTGTTTACCGGCGAAAATTAATCGCTGCTGGTCGGGTGG 11940 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || |||||||| || || || || ||||| || || || || | |||| | ||||| Sbjct 11941 AATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTCTCGATTGTATCGGATGGCTCTAC 12000 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| | |||||| || || ||||| || || || ||||| || ||||| Sbjct 12001 TTCCAACGTGATAGTTTTACCGGTGAGCGTTTTTACGAAAATTTGCAT 12048 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || | ||| ||||| | |||| ||| |||||| || || ||||| || Sbjct 11593 TCCACCACGTAATCTGAGTACCAAGTGAAGAGTGGATTCTTTCTGAATGTTATAATCACT 11652 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || || ||||| || ||||| || || ||||||| || || || ||| Sbjct 11653 CAGAGTACGGCCATCTTCCAACTGTTTACCGGCAAAGATCAATCGTTGCTGGTCTGGTGG 11712 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || |||||||||||||| ||||| ||||| || ||||| || | |||| || ||| || Sbjct 11713 TATGCCTTCTTTATCCTGAATTTTAGCTTTGACATTTTCAATGGTATCGGACGGTTCCAC 11772 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || || || || || || || || || ||||| || ||||| Sbjct 11773 CTCCAAGGTTATGGTTTTTCCAGTGAGCGTTTTAACGAAAATTTGCAT 11820 Score = 104 bits (114), Expect = 6e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || |||||| | || || || |||||||||||||| || ||||| Sbjct 12086 TCTTTCTGAATGTTGTAGTCGCTCAAAGTACGACCATCTTCTAATTGTTTACCGGCGAAA 12145 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | | || || |||||| ||||||||||| |||||||| ||||| || ||| Sbjct 12146 ATTAATCTTTGCTGGTCGGGTGGGATACCTTCTTTATCTTGGATTTTTGCTTTTACATTT 12205 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | ||| ||||| | |||||| || || || || || || || ||| Sbjct 12206 TCGATTGTGTCAGATGGTTCGACTTCTAACGTGATAGTTTTTCCAGTGAGCGTTTTAACG 12265 Query 288463 AATATCTGCATT 288474 || || |||||| Sbjct 12266 AAAATTTGCATT 12277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178439420111708