Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq17446 98.7 2e-15 >seq17446 Length=11869 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 297431 AGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCG 297490 ||||| ||||||||||| || | ||| ||| ||| || |||||||| || |||| |||| Sbjct 4634 AGTTTGGTGAAAATATAACGAGGACTGGCGGCATCTTTGCCACCCTGTAACCTCGTACCG 4575 Query 297491 AACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGG 297550 ||||| || | || || ||||||| |||||||| ||||| |||| || || | Sbjct 4574 AACTGACCGTTGGGTTGTAATAAGTTGATATTATTGCTACCGACGTAATTTTGCGCCAAA 4515 Query 297551 TTCACGATGGT--CCCTTGCAGAGATGCTTCGCCATGGTGATAGGC-GCTATGCTCTGCA 297607 || | || || | || | |||| ||| ||||| ||||| || | || || ||| Sbjct 4514 TTTATAATAGTAGACATT--AACGATGTTTCACCATGATGATATGCTGATA-ATTCGGCA 4458 Query 297608 ACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATT 297651 || ||||| ||||| ||||| |||| || ||||||| || Sbjct 4457 ACTGAACCGGCCAACTGGGCAACTTTCAGCTCTTTCGTCAAGTT 4414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101744093569100