Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq28572 114 1e-20
seq47085 102 9e-17
seq63578 91.5 2e-13
seq20068 89.7 6e-13
seq72207 82.4 8e-11
>seq28572
Length=14732
Score = 114 bits (126), Expect = 1e-20
Identities = 166/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| ||||| || || | |||||||| || || |||||||| ||||||||||| |
Sbjct 3200 ACCACCTCTCAATCGAAGAACCAAATGTAAAGTCGATTCCTTTTGGATATTGTAATCGGA 3259
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
|| || || |||| || || ||||| |||||||| || || || || || || | ||
Sbjct 3260 AAGCGTTCGGCCGTCTTCGAGTTGCTTTCCAGCGAAGATCAGACGTTGTTGATCAGGAGG 3319
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159
| | ||||| | | ||| |||| | |||| | | | ||| || |||| ||| |
Sbjct 3320 AATACCTTCCTTAT-CTTGAATTTTCGCCTTGACGTTTTCGATCGTATCACTCGGTTCAA 3378
Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211
| |||| ||||||||||| || || | ||| ||||| ||||| ||||||||
Sbjct 3379 CTTCGAGGGTGATGGTTTTACCAGTCAACGTTTTTACGAAGATCTGCATTTT 3430
Score = 102 bits (112), Expect = 9e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|||||||| | ||| | |||||||| || || || ||||| || || || || |
Sbjct 2973 CCTCCTCTGAGACGGAGAACCAAATGTAAAGTAGATTCTTTTTGGATGTTATAGTCCGAA 3032
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
|| || | | || || || || ||||| ||||| || || || |||||||| | ||
Sbjct 3033 AGTGTTCTACCATCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGG 3092
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| || || || ||| ||| |||||| |||| | | | ||||||||| | || ||
Sbjct 3093 ATGCCTTCTTTATCC-TGAATTTTTGCCTTGACGTTTTCAATCGTGTCGCTAGGCTCGAC 3151
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||| |||||||||||||| |||| || ||||| ||||| |||||
Sbjct 3152 TTCGAGAGTGATGGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 3199
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
|||||||||||||||| || ||| || || ||||||||||| | ||||| | |
Sbjct 1617 CGCAACACCAAATGCAGCGTCGACTCTTTCTGGATATTGTAATCCGAAAGAGTTCTACCA 1676
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || |||||||| || ||||| || | || ||||| |||| || | | || |||
Sbjct 1677 TCTTCAAGCTGCTTTCCGGCGAAAATTAAACGTTGCTGATCGGGAGGGATTCCTTCTTTG 1736
Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173
|| ||| || |||| | | | |||||||| | ||| || |||| || ||
Sbjct 1737 TCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCGCTAGGTTCGACTTCGAGAGTAATC 1796
Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||||| || || | ||||| || |||||||||||
Sbjct 1797 GTTTTACCGGTCAAGGTCTTAACGAAGATTTGCAT 1831
Score = 91.5 bits (100), Expect = 2e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||||||||| || || | ||| | ||| || || |||||||||||||||||||| |
Sbjct 2060 ACCTCCTCTCAATCGAAGCACGAGATGTAAAGTTGATTCCTTTTGAATATTGTAATCGGA 2119
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
|| || || | || || || || || || || || || | || || || || | ||
Sbjct 2120 GAGGGTTCGGCCATCTTCGAGTTGTTTGCCGGCAAAAATTAAACGTTGTTGATCTGGGGG 2179
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| | ||||| || |||||| |||| | | | ||||| || | || ||
Sbjct 2180 AATTCCTTCCTTATCTTGGATTTTAGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTAC 2239
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||| ||||||||||| |||||||| || || || |||||||||||
Sbjct 2240 TTCGAGAGTGATGGTTTTACCCGTTAGGGTTTTAACGAAGATTTGCAT 2287
Score = 89.7 bits (98), Expect = 6e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
||||||| | ||| | |||||||| ||||| || ||||| || |||||||| |
Sbjct 2517 CCTCCTCGGAGACGGAGAACCAAATGTAATGTCGATTCTTTTTGGATGTTGTAATCGGAA 2576
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
||||| || |||| || || || ||||| ||||| || | || || || || | ||
Sbjct 2577 AGAGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGTTGATCAGGGGGA 2636
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| | |||||| ||| ||| |||| | |||| | | | ||||| || | || ||
Sbjct 2637 ATTCCCTCCTTATCC-TGAATTTTAGCCTTGACATTTTCGATGGTGTCACTGGGCTCTAC 2695
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||| ||||||||||| || |||| || || || || || |||||
Sbjct 2696 TTCGAGAGTGATGGTTTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 2743
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| ||||| || || | || ||||| | || || ||||||||||| ||||| |
Sbjct 1832 ACCGCCTCTCAATCGGAGGACTAAATGAAGAGTCGATTCTTTTTGAATATTATAATCCGA 1891
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
||||| | |||| || || || || || ||||| ||||| || |||||||| | ||
Sbjct 1892 GAGAGTTCTGCCGTCTTCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCTGGAGG 1951
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| | |||||| || |||||| |||| | | | ||||| || | || ||
Sbjct 1952 AATTCCCTCCTTATCTTGGATTTTGGCCTTGACATTTTCGATTGTGTCACTAGGCTCGAC 2011
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||| ||||| ||||| || |||| || || || || ||||||||
Sbjct 2012 TTCGAGGGTGATTGTTTTACCTGTTAAGGTTTTGACGAAAATTTGCAT 2059
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| ||||| || || | || ||||||||||| || ||||| || || || || |
Sbjct 2288 ACCACCTCTCAATCGGAGAACTAAATGCAATGTCGATTCTTTTTGGATGTTATAGTCCGA 2347
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
||||| | | || || || || |||||||| || || || || ||||| || | ||
Sbjct 2348 AAGAGTTCTTCCATCTTCGAGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCAGGGGG 2407
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159
| | |||||| | | ||| |||| | |||| | | | |||||| || | || |
Sbjct 2408 AATTCCCTCCTTAT-CTTGAATTTTGGCCTTGACATTTTCGATCGTGTCACTAGGCTCGA 2466
Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209
| |||| ||||| ||||| || |||| ||||| || || |||||||||
Sbjct 2467 CCTCGAGTGTGATAGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCATT 2516
>seq47085
Length=15572
Score = 102 bits (112), Expect = 9e-17
Identities = 71/81 (88%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
|||||| | |||| |||| | |||||||||| ||||||||||||||||||||| ||||
Sbjct 1158 AAAAATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1217
Query 57058 TCACCACTATACTACCGAGGA 57078
| |||||||||||||||||||
Sbjct 1218 TTACCACTATACTACCGAGGA 1238
>seq63578
Length=26733
Score = 91.5 bits (100), Expect = 2e-13
Identities = 152/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| || |||||||| | ||| |||||||| ||||||||||| | || || |
Sbjct 11833 ACGTAAGACCAAATGTAGGGTGGATTCCTTTTGGATATTGTAATCGCTTAACGTGCGGCC 11892
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| || | || ||||| ||||| || | |||||||||||||| ||| | | || ||
Sbjct 11893 GTCTTCCAATTGTTTACCGGCGAAAATTAATCGCTGCTGGTCGGGTGGAATACCTTCTTT 11952
Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171
|| | ||| | || | ||| | || | | || ||| | || || || | |||||
Sbjct 11953 GT-CTTGAATCTTGGCTTTAACATTCTCGATTGTATCGGATGGCTCTACTTCCAACGTGA 12011
Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| ||||| || || ||||| ||||| || ||||||||
Sbjct 12012 TAGTTTTACCGGTGAGCGTTTTTACGAAAATTTGCAT 12048
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|| |||| | ||| || || ||||| | ||| || ||||| ||||| ||||| |
Sbjct 12278 CCACCTCGAAGACGTAAAACTAAATGAAGAGTGGATTCTTTTTGGATATTATAATCGCTC 12337
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
| || || |||| || | || ||||| ||||| || | || ||||||||||| |||
Sbjct 12338 AAGGTACGACCGTCTTCCAATTGTTTACCGGCGAAAATTAATCTCTGCTGGTCGGGTGGG 12397
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| || || |||| | ||| |||| | ||| | | | | || || || ||||||
Sbjct 12398 ATGCCTTCTTTGT-CTTGAATTTTGGCTTTCACGTTTTCAATAGTATCAGACGGTTCCAC 12456
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| | ||||| ||||| || |||||||| || ||| ||||||||
Sbjct 12457 TTCCAAGGTGATAGTTTTTCCGGTTAGCGTAATTTGAAAAATTTGCAT 12504
>seq20068
Length=5456
Score = 89.7 bits (98), Expect = 6e-13
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 57024 GAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGATTGA 57082
|||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1 GAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTACCGAGGATTGA 59
>seq72207
Length=3800
Score = 82.4 bits (90), Expect = 8e-11
Identities = 54/60 (90%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 57026 ACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGATTGAATA 57085
|||| ||||||||||||||||||||| ||||| ||||||||||||||||||| || |||
Sbjct 3800 ACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTACCGAGGACTGTATA 3741
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 542666966198240
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