Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq28572 114 1e-20 seq47085 102 9e-17 seq63578 91.5 2e-13 seq20068 89.7 6e-13 seq72207 82.4 8e-11 >seq28572 Length=14732 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || || | |||||||| || || |||||||| ||||||||||| | Sbjct 3200 ACCACCTCTCAATCGAAGAACCAAATGTAAAGTCGATTCCTTTTGGATATTGTAATCGGA 3259 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || |||| || || ||||| |||||||| || || || || || || | || Sbjct 3260 AAGCGTTCGGCCGTCTTCGAGTTGCTTTCCAGCGAAGATCAGACGTTGTTGATCAGGAGG 3319 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||||| | | ||| |||| | |||| | | | ||| || |||| ||| | Sbjct 3320 AATACCTTCCTTAT-CTTGAATTTTCGCCTTGACGTTTTCGATCGTATCACTCGGTTCAA 3378 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 | |||| ||||||||||| || || | ||| ||||| ||||| |||||||| Sbjct 3379 CTTCGAGGGTGATGGTTTTACCAGTCAACGTTTTTACGAAGATCTGCATTTT 3430 Score = 102 bits (112), Expect = 9e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | ||| | |||||||| || || || ||||| || || || || | Sbjct 2973 CCTCCTCTGAGACGGAGAACCAAATGTAAAGTAGATTCTTTTTGGATGTTATAGTCCGAA 3032 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || | | || || || || ||||| ||||| || || || |||||||| | || Sbjct 3033 AGTGTTCTACCATCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGG 3092 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || || || ||| ||| |||||| |||| | | | ||||||||| | || || Sbjct 3093 ATGCCTTCTTTATCC-TGAATTTTTGCCTTGACGTTTTCAATCGTGTCGCTAGGCTCGAC 3151 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| |||||||||||||| |||| || ||||| ||||| ||||| Sbjct 3152 TTCGAGAGTGATGGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 3199 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||||||||||||||| || ||| || || ||||||||||| | ||||| | | Sbjct 1617 CGCAACACCAAATGCAGCGTCGACTCTTTCTGGATATTGTAATCCGAAAGAGTTCTACCA 1676 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| || | || ||||| |||| || | | || ||| Sbjct 1677 TCTTCAAGCTGCTTTCCGGCGAAAATTAAACGTTGCTGATCGGGAGGGATTCCTTCTTTG 1736 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 || ||| || |||| | | | |||||||| | ||| || |||| || || Sbjct 1737 TCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCGCTAGGTTCGACTTCGAGAGTAATC 1796 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || || | ||||| || ||||||||||| Sbjct 1797 GTTTTACCGGTCAAGGTCTTAACGAAGATTTGCAT 1831 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| || || | ||| | ||| || || |||||||||||||||||||| | Sbjct 2060 ACCTCCTCTCAATCGAAGCACGAGATGTAAAGTTGATTCCTTTTGAATATTGTAATCGGA 2119 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || || || || || || || || | || || || || | || Sbjct 2120 GAGGGTTCGGCCATCTTCGAGTTGTTTGCCGGCAAAAATTAAACGTTGTTGATCTGGGGG 2179 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||| || |||||| |||| | | | ||||| || | || || Sbjct 2180 AATTCCTTCCTTATCTTGGATTTTAGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTAC 2239 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||||||||| |||||||| || || || ||||||||||| Sbjct 2240 TTCGAGAGTGATGGTTTTACCCGTTAGGGTTTTAACGAAGATTTGCAT 2287 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||||| | ||| | |||||||| ||||| || ||||| || |||||||| | Sbjct 2517 CCTCCTCGGAGACGGAGAACCAAATGTAATGTCGATTCTTTTTGGATGTTGTAATCGGAA 2576 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || |||| || || || ||||| ||||| || | || || || || | || Sbjct 2577 AGAGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGTTGATCAGGGGGA 2636 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||| ||| ||| |||| | |||| | | | ||||| || | || || Sbjct 2637 ATTCCCTCCTTATCC-TGAATTTTAGCCTTGACATTTTCGATGGTGTCACTGGGCTCTAC 2695 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||||||||| || |||| || || || || || ||||| Sbjct 2696 TTCGAGAGTGATGGTTTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 2743 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || || | || ||||| | || || ||||||||||| ||||| | Sbjct 1832 ACCGCCTCTCAATCGGAGGACTAAATGAAGAGTCGATTCTTTTTGAATATTATAATCCGA 1891 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | |||| || || || || || ||||| ||||| || |||||||| | || Sbjct 1892 GAGAGTTCTGCCGTCTTCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCTGGAGG 1951 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||| || |||||| |||| | | | ||||| || | || || Sbjct 1952 AATTCCCTCCTTATCTTGGATTTTGGCCTTGACATTTTCGATTGTGTCACTAGGCTCGAC 2011 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| ||||| || |||| || || || || |||||||| Sbjct 2012 TTCGAGGGTGATTGTTTTACCTGTTAAGGTTTTGACGAAAATTTGCAT 2059 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || || | || ||||||||||| || ||||| || || || || | Sbjct 2288 ACCACCTCTCAATCGGAGAACTAAATGCAATGTCGATTCTTTTTGGATGTTATAGTCCGA 2347 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | | || || || || |||||||| || || || || ||||| || | || Sbjct 2348 AAGAGTTCTTCCATCTTCGAGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCAGGGGG 2407 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | |||||| | | ||| |||| | |||| | | | |||||| || | || | Sbjct 2408 AATTCCCTCCTTAT-CTTGAATTTTGGCCTTGACATTTTCGATCGTGTCACTAGGCTCGA 2466 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | |||| ||||| ||||| || |||| ||||| || || ||||||||| Sbjct 2467 CCTCGAGTGTGATAGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCATT 2516 >seq47085 Length=15572 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 1158 AAAAATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1217 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 1218 TTACCACTATACTACCGAGGA 1238 >seq63578 Length=26733 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| || |||||||| | ||| |||||||| ||||||||||| | || || | Sbjct 11833 ACGTAAGACCAAATGTAGGGTGGATTCCTTTTGGATATTGTAATCGCTTAACGTGCGGCC 11892 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || | || ||||| ||||| || | |||||||||||||| ||| | | || || Sbjct 11893 GTCTTCCAATTGTTTACCGGCGAAAATTAATCGCTGCTGGTCGGGTGGAATACCTTCTTT 11952 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 || | ||| | || | ||| | || | | || ||| | || || || | ||||| Sbjct 11953 GT-CTTGAATCTTGGCTTTAACATTCTCGATTGTATCGGATGGCTCTACTTCCAACGTGA 12011 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | ||||| || || ||||| ||||| || |||||||| Sbjct 12012 TAGTTTTACCGGTGAGCGTTTTTACGAAAATTTGCAT 12048 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||| | ||| || || ||||| | ||| || ||||| ||||| ||||| | Sbjct 12278 CCACCTCGAAGACGTAAAACTAAATGAAGAGTGGATTCTTTTTGGATATTATAATCGCTC 12337 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || |||| || | || ||||| ||||| || | || ||||||||||| ||| Sbjct 12338 AAGGTACGACCGTCTTCCAATTGTTTACCGGCGAAAATTAATCTCTGCTGGTCGGGTGGG 12397 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || || |||| | ||| |||| | ||| | | | | || || || |||||| Sbjct 12398 ATGCCTTCTTTGT-CTTGAATTTTGGCTTTCACGTTTTCAATAGTATCAGACGGTTCCAC 12456 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| ||||| || |||||||| || ||| |||||||| Sbjct 12457 TTCCAAGGTGATAGTTTTTCCGGTTAGCGTAATTTGAAAAATTTGCAT 12504 >seq20068 Length=5456 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 57024 GAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGATTGA 57082 |||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1 GAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTACCGAGGATTGA 59 >seq72207 Length=3800 Score = 82.4 bits (90), Expect = 8e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 57026 ACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGATTGAATA 57085 |||| ||||||||||||||||||||| ||||| ||||||||||||||||||| || ||| Sbjct 3800 ACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTACCGAGGACTGTATA 3741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542666966198240