Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq63578 134 1e-26 seq28572 111 2e-19 >seq63578 Length=26733 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||||||||||||| | | ||||| || |||||||||||||||||| Sbjct 12050 CCACCACGTAGACGCAAAACTAAATGCAGCGTAGACTCTTTCTGAATGTTGTAGTCGCTC 12109 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || | ||||||||||| | |||| | || ||||| || || Sbjct 12110 AAAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATTAATCTTTGCTGGTCGGGTGGG 12169 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||||||||| || ||||||| ||||| | ||| | ||||| | | || || Sbjct 12170 ATACCTTCTTTATCTTGGATTTTTGCTTTTACATTTTCGATTGTGTCAGATGGTTCGACT 12229 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | ||||| ||||| || ||||| || ||||| ||||| Sbjct 12230 TCTAACGTGATAGTTTTTCCAGTGAGCGTTTTAACGAAAATTTGCAT 12276 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| || || ||||||| | | || |||||||| || ||||| ||||| Sbjct 11822 CCACCGCGAAGACGTAAGACCAAATGTAGGGTGGATTCCTTTTGGATATTGTAATCGCTT 11881 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || | ||||||||||| | |||| ||||| ||||| || || Sbjct 11882 AACGTGCGGCCGTCTTCCAATTGTTTACCGGCGAAAATTAATCGCTGCTGGTCGGGTGGA 11941 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||||||||| ||| | || | ||||| | || | || |||| | ||| || Sbjct 11942 ATACCTTCTTTGTC-TTGAATCTTGGCTTTAACATTCTCGATTGTATCGGATGGCTCTAC 12000 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | |||||||| || || |||||||| ||||| ||||| Sbjct 12001 TTCCAACGTGATAGTTTTACCGGTGAGCGTTTTTACGAAAATTTGCAT 12048 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| ||||||||||| | | || || ||||| || || || |||||| Sbjct 12278 CCACCTCGAAGACGTAAAACTAAATGAAGAGTGGATTCTTTTTGGATATTATAATCGCTC 12337 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||| || | ||||||||||| | |||| | ||| ||||| || || Sbjct 12338 AAGGTACGACCGTCTTCCAATTGTTTACCGGCGAAAATTAATCTCTGCTGGTCGGGTGGG 12397 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| |||| | ||| | | ||| | || || | || ||||| Sbjct 12398 ATGCCTTCTTTGTC-TTGAATTTTGGCTTTCACGTTTTCAATAGTATCAGACGGTTCCAC 12456 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || || || || || |||||| ||||| Sbjct 12457 TTCCAAGGTGATAGTTTTTCCGGTTAGCGTAATTTGAAAAATTTGCAT 12504 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || ||||| | | || || |||||||| |||||||||||| Sbjct 12506 CCGCCGCGAAGACGTAGGACCAAATGAAGCGTCGATTCTTTTTGAATATTGTAGTCGCTC 12565 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | ||||||||||| | | |||| || || ||||| || || Sbjct 12566 AATGTGCGGCCATCTTCCAATTGTTTACCGGCAAAAATTAACCGTTGCTGGTCAGGTGGG 12625 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || ||| | || | ||| | | ||| | || |||| | || || Sbjct 12626 ATTCCTTCTTTATC-TTGAATCTTGGCTTTGACGTTTTCGATCGTATCGGATGGTTCAAC 12684 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || || ||||||||||| || || ||||| Sbjct 12685 TTCCAAAGTAATGGTTTTTCCGGTAAGAGTTTTTACGAAGATTTGCAT 12732 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||||||||| ||||| | | | |||||||| ||||| || || ||||| Sbjct 11366 CCGCCACGAAGACGCAAAACCAAATGAAGGGTGGACTCCTTCTGAATATTATAATCGCTT 11425 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | ||| || || | | || | | ||| ||||| || || Sbjct 11426 AACGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCTCTGCTGGTCAGGCGGG 11485 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||||||||| || ||| |||| | ||| | | || | ||| |||| || || || Sbjct 11486 ATACCTTCTTTATC-TTGAATTTTAGCTTTCACGTTCTCGATGGTATCGGACGGTTCGAC 11544 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || | |||||| || ||||| ||||| Sbjct 11545 TTCCAAGGTAATAGTCTTGCCGGTTAAAGTTTTCACGAAAATTTGCAT 11592 >seq28572 Length=14732 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | ||| ||||||| | || || ||||| |||||||| ||| Sbjct 2517 CCTCCTCGGAGACGGAGAACCAAATGTAATGTCGATTCTTTTTGGATGTTGTAATCGGAA 2576 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||| |||||||||||||||| | |||| ||| ||||| || || || Sbjct 2577 AGAGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGTTGATCAGGGGGA 2636 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || || || ||| |||| | || | | ||| | |||||| | | ||| || Sbjct 2637 ATTCCCTCCTTATC-CTGAATTTTAGCCTTGACATTTTCGATGGTGTCACTGGGCTCTAC 2695 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | ||||||||||| | ||||| || ||||||||||| Sbjct 2696 TTCGAGAGTGATGGTTTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 2743 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| || | ||| ||||||| | || |||||||| || ||||| ||| Sbjct 3201 CCACCTCTCAATCGAAGAACCAAATGTAAAGTCGATTCCTTTTGGATATTGTAATCGGAA 3260 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| |||||||| || || | |||| ||||| ||||| || ||||| Sbjct 3261 AGCGTTCGGCCGTCTTCGAGTTGCTTTCCAGCGAAGATCAGACGTTGTTGATCAGGAGGA 3320 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| || || ||| |||| | || | | ||| | || || ||| || || Sbjct 3321 ATACCTTCCTTATCT-TGAATTTTCGCCTTGACGTTTTCGATCGTATCACTCGGTTCAAC 3379 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | ||||||||||||| |||||||| || |||||||| Sbjct 3380 TTCGAGGGTGATGGTTTTACCAGTCAACGTTTTTACGAAGATCTGCAT 3427 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||| | ||| ||||||| | || || ||||| ||||| ||||| Sbjct 2973 CCTCCTCTGAGACGGAGAACCAAATGTAAAGTAGATTCTTTTTGGATGTTATAGTCCGAA 3032 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | || |||||||||||||||| | || ||||| || ||||||||||| Sbjct 3033 AGTGTTCTACCATCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGG 3092 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || ||| |||||| || | | ||| | |||||| | | ||| || Sbjct 3093 ATGCCTTCTTTATC-CTGAATTTTTGCCTTGACGTTTTCAATCGTGTCGCTAGGCTCGAC 3151 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | ||||| || || | |||||||| || |||||||| Sbjct 3152 TTCGAGAGTGATGGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 3199 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| || | || | ||||| |||| ||||||||||| ||||| ||| Sbjct 2061 CCTCCTCTCAATCGAAGCACGAGATGTAAAGTTGATTCCTTTTGAATATTGTAATCGGAG 2120 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || ||||||||||| |||| | | |||| ||| ||||| || || || Sbjct 2121 AGGGTTCGGCCATCTTCGAGTTGTTTGCCGGCAAAAATTAAACGTTGTTGATCTGGGGGA 2180 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| || || |||||| || | | ||| | |||||| | | ||| || Sbjct 2181 ATTCCTTCCTTATCTTGGATTTTAGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTACT 2240 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | |||||||| || || ||||| || || || ||||| Sbjct 2241 TCGAGAGTGATGGTTTTACCCGTTAGGGTTTTAACGAAGATTTGCAT 2287 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| || | ||||||||| | | || || ||||| ||||| ||||| Sbjct 2289 CCACCTCTCAATCGGAGAACTAAATGCAATGTCGATTCTTTTTGGATGTTATAGTCCGAA 2348 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | || |||||||||||||| | | |||| ||||| || || || || || Sbjct 2349 AGAGTTCTTCCATCTTCGAGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCAGGGGGA 2408 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || || || ||| |||| | || | | ||| | ||||| | | ||| || Sbjct 2409 ATTCCCTCCTTATC-TTGAATTTTGGCCTTGACATTTTCGATCGTGTCACTAGGCTCGAC 2467 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | ||||||||||| | || || || ||||| ||||| Sbjct 2468 CTCGAGTGTGATAGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 2515 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| || | |||||||| | | | || || ||||| ||||| ||||| Sbjct 2745 CCACCTCTCAATCGAAGGACTAAATGAAGGGTCGATTCTTTTTGGATGTTATAGTCAGAG 2804 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | || ||||||||||| || | |||| ||||| ||||| || || || Sbjct 2805 AGAGTTCTTCCATCTTCGAGTTGTTTGCCAGCGAAGATGAGACGTTGTTGATCGGGTGGA 2864 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || ||||| || ||||| || | | ||| | |||||| | | ||| || Sbjct 2865 ATTCCCTCTTTATCTTGTATTTTGGCCTTGACGTTTTCAATAGTGTCGCTAGGCTCAACT 2924 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | |||||||||||||| || || || || || ||||| Sbjct 2925 TCGAGTGTAATCGTTTTACCAGTCAAGGTCTTGACGAAGATTTGCAT 2971 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||||| ||| || | |||||||| | | || || |||||||| || || || Sbjct 1833 CCGCCTCTCAATCGGAGGACTAAATGAAGAGTCGATTCTTTTTGAATATTATAATCCGAG 1892 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | ||| ||||||||||| |||| | || ||||| || ||||| ||||| Sbjct 1893 AGAGTTCTGCCGTCTTCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCTGGAGGA 1952 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || || || |||||| || | | ||| | ||||| | | ||| || Sbjct 1953 ATTCCCTCCTTATCTTGGATTTTGGCCTTGACATTTTCGATTGTGTCACTAGGCTCGACT 2012 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | |||||||| || | ||||| || ||||| ||||| Sbjct 2013 TCGAGGGTGATTGTTTTACCTGTTAAGGTTTTGACGAAAATTTGCAT 2059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495763743133920