Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq9614 497 4e-136 seq19165 360 8e-95 >seq9614 Length=652 Score = 497 bits (550), Expect = 4e-136 Identities = 289/298 (97%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 22925 TACGAAAGAATTGATGGCAGCAAATACCGAAATATTTGGGTAGTTGGCGATCTGCACGGA 22984 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 TACGAAAAAATTGATGGCAGCAAATACCGAAATATTTGGGTAGTTGGCGATCTGCACGGA 243 Query 22985 TGCTACACGAACCTGATGAAAAAACTGGAGACGATAGGATTCGACACCAAAAAAGACCTG 23044 |||||||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||| Sbjct 242 TGCTACACGAACCTGATGAACAAACTGGATACGATTGGATTCGACAACAAAAAAGACCTG 183 Query 23045 CTTATCTCGGTGGGCGATTTGGTTGATCGCGGTACAGAGAACGTAGAATGCCTGGAATTA 23104 ||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||| Sbjct 182 CTTATCTCGGTGGGCGATTTGGTTGATCGTGGTGCAGAGAACGTTGAATGCCTGGAATTA 123 Query 23105 ATCACATTCCCCTGGTTCAGAGCTGTACGTGGAAACCATGAGCAAATGATGATTGATGGC 23164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 122 ATCACATTCCCCTGGTTCAGAGCTGTACGTGGAAACCATGAGCAAATGATGATTGATGGC 63 Query 23165 TTATCAGAGCGTGGAAACGTCAATCACTGGCTGCTTAATGGCGGTGGCTGGTTCTTTA 23222 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 62 TTATCAGAGCGTGGAAACGTTAATCACTGGCTGCTTAATGGCGGTGGCTGGTTCTTTA 5 Score = 237 bits (262), Expect = 6e-58 Identities = 149/161 (93%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 22759 ATCGCGTCGAACTGATTAACCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCAAACC 22818 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 652 ATCGCGTCGAACTGATTAGCCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCAAACC 593 Query 22819 ATAACCGCCATCGCTGGACTGTCGAAGAGTGCAGGGCCATCAAGGCGGAGTATCAACAGA 22878 |||||||||||||||||||| |||||||||||| ||| |||||||| ||||| ||||||| Sbjct 592 ATAACCGCCATCGCTGGACTATCGAAGAGTGCAAGGCGATCAAGGCAGAGTACCAACAGA 533 Query 22879 AACTTAAAAAACTGCGAAACAGCAGAAGTGAGGTTGCATGA 22919 |||| ||| | |||||||| ||||||||||||| |||||| Sbjct 532 AACTCAAAGACCTGCGAAATAGCAGAAGTGAGGCCGCATGA 492 >seq19165 Length=1007 Score = 360 bits (398), Expect = 8e-95 Identities = 226/244 (93%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 4960 TTGCTTTTTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 5019 |||| | |||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 252 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 193 Query 5020 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 5079 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 192 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 133 Query 5080 TGCCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTTGCGGATAC 5139 ||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 132 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 73 Query 5140 AGTCTGGTAGTTCAGGCGACGCATTTTTATTGCTGTATTGCGCTGTAATTCTTCAATTTC 5199 || ||||| ||||||||| ||||||||||||||||| ||||||||||||||||| ||||| Sbjct 72 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTC 13 Query 5200 TGAT 5203 |||| Sbjct 12 TGAT 9 Score = 277 bits (306), Expect = 7e-70 Identities = 179/196 (91%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 4573 TTTCCAGTTCTGCTATGCGCTTACTTCCATCCGCGATTACTCCCTCGTAATATTCACGCT 4632 ||||||||| || || |||||||| ||||||| ||| || || |||||||| ||||||| Sbjct 507 TTTCCAGTTTAGCAATACGCTTACTCCCATCCGAGATAACACCTTCGTAATACTCACGCT 448 Query 4633 GCTCGTTGAGTTTTGATTTTGCTGCTTCAAGCTCAACACGCAGCTTCCCAACCGTAAGCG 4692 |||||||||||||||||||||||| |||||||||||||||||| ||||| || || |||| Sbjct 447 GCTCGTTGAGTTTTGATTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCG 388 Query 4693 CAATCCCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCAT 4752 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 387 CAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCAT 328 Query 4753 CCAGCAGTTCCAGCAC 4768 |||||||||||||||| Sbjct 327 CCAGCAGTTCCAGCAC 312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198559077625188