Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq28572 149 4e-31 seq63578 145 5e-30 seq77090 87.8 1e-12 seq46443 84.2 2e-11 >seq28572 Length=14732 Score = 149 bits (164), Expect = 4e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||| | |||||||||||||| || |||||||| ||||| || || | Sbjct 2745 CCACCTCTCAATCGAAGGACTAAATGAAGGGTCGATTCTTTTTGGATGTTATAGTCAGAG 2804 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||| | ||||||||||||| | || | ||| ||||| ||| |||| Sbjct 2805 AGAGTTCTTCCATCTTCGAGTTGTTTGCCAGCGAAGATGAGACGTTGTTGATCGGGTGGA 2864 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| || || || |||||| || || |||| ||||| |||||| || || Sbjct 2865 ATTCCCTCTTTATCTTGTATTTTGGCCTTGACGTTTTCAATAGTGTCGCTAGGCTCAACT 2924 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||||| |||||||| |||| || || || || |||||||| Sbjct 2925 TCGAGTGTAATCGTTTTACCAGTCAAGGTCTTGACGAAGATTTGCAT 2971 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||||| | ||||||||||| || || |||||||| || || ||||| | Sbjct 1833 CCGCCTCTCAATCGGAGGACTAAATGAAGAGTCGATTCTTTTTGAATATTATAATCCGAG 1892 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| ||||||| | |||||| || ||| | || | ||| || ||||| ||| Sbjct 1893 AGAGTTCTGCCGTCTTCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCTGGAGGA 1952 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| ||||| || |||||| || ||| |||| || || || ||| || || Sbjct 1953 ATTCCCTCCTTATCTTGGATTTTGGCCTTGACATTTTCGATTGTGTCACTAGGCTCGACT 2012 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||| || ||||||||||| | ||||| || |||||||||||| Sbjct 2013 TCGAGGGTGATTGTTTTACCTGTTAAGGTTTTGACGAAAATTTGCATA 2060 Score = 131 bits (144), Expect = 1e-25 Identities = 174/241 (72%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||| | ||| ||||| | || || || ||||| || ||||||||| Sbjct 3201 CCACCTCTCAATCGAAGAACCAAATGTAAAGTCGATTCCTTTTGGATATTGTAATCGGAA 3260 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| ||||||| | ||| || |||||| | |||| ||| ||||| || ||| Sbjct 3261 AGCGTTCGGCCGTCTTCGAGTTGCTTTCCAGCGAAGATCAGACGTTGTTGATCAGGAGGA 3320 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || |||||| || || |||| || ||||| || ||| || Sbjct 3321 ATACCTTCCTTATCTTGAATTTTCGCCTTGACGTTTTCGATCGTATCACTCGGTTCAACT 3380 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT--TGAAATAA 15187 || | ||| ||||||||||| |||| |||||||| || || ||||| || |||||| | Sbjct 3381 TCGAGGGTGATGGTTTTACCAGTCAACGTTTTTACGAAGATCTGCATTTTTCTGAAATCA 3440 Query 15188 A 15188 | Sbjct 3441 A 3441 Score = 120 bits (132), Expect = 2e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||| | || || |||||||| |||||||||||| ||| ||| ||||||| Sbjct 2534 AACCAAATGTAATGTCGATTCTTTTTGGATGTTGTAATCGGAAAGAGTTCGGCCGTCTTC 2593 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| || ||| | || ||||| ||||| || |||||||| ||||| || Sbjct 2594 GAGTTGTTTACCGGCGAAAATTAAACGTTGTTGATCAGGGGGAATTCCCTCCTTATCCTG 2653 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| || ||| |||| || || || || ||||| || | || |||||||| Sbjct 2654 AATTTTAGCCTTGACATTTTCGATGGTGTCACTGGGCTCTACTTCGAGAGTGATGGTTTT 2713 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||| || | ||||| || ||||| |||||| Sbjct 2714 ACCAGTTAAGGTTTTGACGAAAATCTGCATA 2744 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||| | ||||||||| | || || |||||||| ||||| || || Sbjct 2289 CCACCTCTCAATCGGAGAACTAAATGCAATGTCGATTCTTTTTGGATGTTATAGTCCGAA 2348 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||| | |||||| ||||| | || | ||| || || || ||| Sbjct 2349 AGAGTTCTTCCATCTTCGAGTTGTTTACCAGCAAAGATAAGACGTTGCTGATCAGGGGGA 2408 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| ||||| || ||||||| || ||| |||| || || || ||| || || Sbjct 2409 ATTCCCTCCTTATCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCACTAGGCTCGACC 2468 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || || |||||||| || | || || || ||||||||||| Sbjct 2469 TCGAGTGTGATAGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 2515 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||||| | || | ||| | || || || ||||| || ||||||||| | Sbjct 2061 CCTCCTCTCAATCGAAGCACGAGATGTAAAGTTGATTCCTTTTGAATATTGTAATCGGAG 2120 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| | ||||| | ||||||||| || | || ||||| ||||| || ||| Sbjct 2121 AGGGTTCGGCCATCTTCGAGTTGTTTGCCGGCAAAAATTAAACGTTGTTGATCTGGGGGA 2180 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || ||||| || || |||| || || || || ||||| Sbjct 2181 ATTCCTTCCTTATCTTGGATTTTAGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTACT 2240 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || ||||||||||| || || ||||| || || ||||||||| Sbjct 2241 TCGAGAGTGATGGTTTTACCCGTTAGGGTTTTAACGAAGATTTGCATA 2288 >seq63578 Length=26733 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | ||| || ||||| ||||| || || ||||| || ||||||||||| Sbjct 11822 CCACCGCGAAGACGTAAGACCAAATGTAGGGTGGATTCCTTTTGGATATTGTAATCGCTT 11881 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | ||||||| |||||||| || ||| | || || ||||| |||||| |||| Sbjct 11882 AACGTGCGGCCGTCTTCCAATTGTTTACCGGCGAAAATTAATCGCTGCTGGTCGGGTGGA 11941 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| ||| ||| ||| ||| | || || |||||| ||||| Sbjct 11942 ATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTCTCGATTGTATCGGATGGCTCTACT 12001 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || |||||||| || || |||||||| |||||||||||| Sbjct 12002 TCCAACGTGATAGTTTTACCGGTGAGCGTTTTTACGAAAATTTGCATA 12049 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||| | | ||||||||||||||| || || |||||||| || || |||||||| Sbjct 12278 CCACCTCGAAGACGTAAAACTAAATGAAGAGTGGATTCTTTTTGGATATTATAATCGCTC 12337 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | ||||||| |||||||| || ||| | || || | ||| |||||| ||| Sbjct 12338 AAGGTACGACCGTCTTCCAATTGTTTACCGGCGAAAATTAATCTCTGCTGGTCGGGTGGG 12397 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| ||||||| ||| || |||| |||||||| ||| || Sbjct 12398 ATGCCTTCTTTGTCTTGAATTTTGGCTTTCACGTTTTCAATAGTATCAGACGGTTCCACT 12457 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| || ||||| || || || || || ||||||||||||| Sbjct 12458 TCCAAGGTGATAGTTTTTCCGGTTAGCGTAATTTGAAAAATTTGCATA 12505 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || ||||| | || || ||||| || || ||||| || ||||| ||||| || Sbjct 11594 CCACCACGTAATCTGAGTACCAAGTGAAGAGTGGATTCTTTCTGAATGTTATAATCACTC 11653 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| || ||||| || || | ||||| || || ||||| ||| Sbjct 11654 AGAGTACGGCCATCTTCCAACTGTTTACCGGCAAAGATCAATCGTTGCTGGTCTGGTGGT 11713 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || |||||| ||| ||| |||| || |||||| ||| || Sbjct 11714 ATGCCTTCTTTATCCTGAATTTTAGCTTTGACATTTTCAATGGTATCGGACGGTTCCACC 11773 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| |||||||| || || || ||||| || |||||||||||| Sbjct 11774 TCCAAGGTTATGGTTTTTCCAGTGAGCGTTTTAACGAAAATTTGCATA 11821 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 ||||||||||| || ||||| ||||| || |||||||| ||||| | | | | | ||| Sbjct 12065 AAAACTAAATGCAGCGTAGACTCTTTCTGAATGTTGTAGTCGCTCAAAGTACGACCATCT 12124 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 ||||||||||| || ||| | || || | || |||||| ||| || ||||| || || Sbjct 12125 TCTAATTGTTTACCGGCGAAAATTAATCTTTGCTGGTCGGGTGGGATACCTTCTTTATCT 12184 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||| ||||||| |||| || || || ||| || ||||| || || ||| Sbjct 12185 TGGATTTTTGCTTTTACATTTTCGATTGTGTCAGATGGTTCGACTTCTAACGTGATAGTT 12244 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || ||||| || ||||||||||| Sbjct 12245 TTTCCAGTGAGCGTTTTAACGAAAATTTGCAT 12276 Score = 122 bits (134), Expect = 6e-23 Identities = 158/217 (73%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || |||||||| || || |||||||| || ||||| ||||| | | | | ||||| Sbjct 12524 ACCAAATGAAGCGTCGATTCTTTTTGAATATTGTAGTCGCTCAATGTGCGGCCATCTTCC 12583 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||||||| || || | || || || || ||||| ||| |||||||| || || | Sbjct 12584 AATTGTTTACCGGCAAAAATTAACCGTTGCTGGTCAGGTGGGATTCCTTCTTTATCTTGA 12643 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| ||| || |||| || |||||| ||| || || || ||||||||||| Sbjct 12644 ATCTTGGCTTTGACGTTTTCGATCGTATCGGATGGTTCAACTTCCAAAGTAATGGTTTTT 12703 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 || || ||||||||||| || |||||||| |||||| Sbjct 12704 CCGGTAAGAGTTTTTACGAAGATTTGCAT-CTTGAAA 12739 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 ||||| ||||||||||| || || || || || || |||||||| | | | | ||| Sbjct 11381 AAAACCAAATGAAGGGTGGACTCCTTCTGAATATTATAATCGCTTAACGTGCGGCCATCT 11440 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || ||||| || |||||| | ||||| | ||| ||||| || || ||||| || || Sbjct 11441 TCCAATTGCTTTCCAGCGAAAATCAATCTCTGCTGGTCAGGCGGGATACCTTCTTTATCT 11500 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 |||||| ||| || | || || |||||| ||| || || |||||||| || Sbjct 11501 TGAATTTTAGCTTTCACGTTCTCGATGGTATCGGACGGTTCGACTTCCAAGGTAATAGTC 11560 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || | |||||| || ||||||||||| Sbjct 11561 TTGCCGGTTAAAGTTTTCACGAAAATTTGCAT 11592 >seq77090 Length=20911 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||| ||| |||||||| | || || |||||||| ||||||||||| Sbjct 10632 CCACCTCTCAATCGTAACACTAAATGTAACGTCGATTCTTTTTGGATGTTGTAATCAGAA 10573 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| ||| | ||||| | ||| || |||||| | |||||||| ||||| || ||| Sbjct 10572 AGAGTTCGTCCATCTTCAAGTTGCTTACCAGCGAAAATCAAACGTTGTTGATCAGGAGGA 10513 Query 15070 ATTCCT 15075 || ||| Sbjct 10512 ATGCCT 10507 >seq46443 Length=17015 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 15073 CCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCT 15132 ||||| ||||| ||| || ||| ||| |||| |||||||||||| || || || Sbjct 12895 CCTTCTTTGTCTTGAATCTTAGCTTTCACATTTTCGATAGTATCGCTAGGCTCGACCTCG 12954 Query 15133 AAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | ||| ||||| ||||| |||| |||||| |||||||||||||| Sbjct 12955 AGGGTGATGGTCTTACCCGTCAAAGTTTTGACAAAAATTTGCAT 12998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357041861494010