Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_011802.1 Length=41941 Score E Sequences producing significant alignments: (Bits) Value seq9614 228 2e-55 seq19165 149 2e-31 >seq9614 Length=652 Score = 228 bits (252), Expect = 2e-55 Identities = 147/161 (91%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 19467 ATCGCGTCGAACTGATTAATCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCAAACC 19526 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 652 ATCGCGTCGAACTGATTAGCCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCAAACC 593 Query 19527 ATAACCGCCATCGCTGGACTATCGAAGAATGCAAAGCGATTAAGGCGGAGTATCAGCAGA 19586 |||||||||||||||||||||||||||| ||||| ||||| ||||| ||||| || |||| Sbjct 592 ATAACCGCCATCGCTGGACTATCGAAGAGTGCAAGGCGATCAAGGCAGAGTACCAACAGA 533 Query 19587 AACTTAAAGACCTGCGTGACAGCAGAAGAGAGGCAGCATGA 19627 |||| ||||||||||| | |||||||| ||||| |||||| Sbjct 532 AACTCAAAGACCTGCGAAATAGCAGAAGTGAGGCCGCATGA 492 Score = 93.3 bits (102), Expect = 1e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 19837 GAGGCCGCATGACACACACTATCAAAACCATTCCAGACATGCTCATTGAGACATACGGAA 19896 ||||||||||||| | | | ||||||||||||||||||||| |||| |||||||||| Sbjct 503 GAGGCCGCATGACGTTCTCAGTAAAAACCATTCCAGACATGCTCGTTGAAACATACGGAA 444 Query 19897 ACCAGACAGAAGTAGCCAGGCGATTGTCGTGCCATCGAAACACAGTCAGGCGTTATCTGT 19956 | |||||||||||||| | || || || ||| || ||||| || | Sbjct 443 ATCAGACAGAAGTAGCACGCAGACTGAAATGTAGTCGCGGTACGGTCAGAAAATACGTTG 384 Query 19957 ACGACAAAGAAGCCAGGTATCACGCCATCGTTAACGGCGTTTTAATGATTCATC 20010 | || ||||| | | ||||||||||| |||| |||| | ||| |||||| Sbjct 383 ATGATAAAGACGGGAAAATGCACGCCATCGTCAACGACGTTCTCATGGTTCATC 330 >seq19165 Length=1007 Score = 149 bits (164), Expect = 2e-31 Identities = 91/97 (94%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 5910 GCAGCTTCCCTACCGTAAGAGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATT 5969 |||| |||||||| || || |||||||||||||||||||||||||||||||||||||||| Sbjct 408 GCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATT 349 Query 5970 GCTGGTTTCTTTCCCGTTCATCCAGTAGTGCCAGCAC 6006 ||||||||||||||||||||||||| ||| ||||||| Sbjct 348 GCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133961600246796