Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq28572 123 6e-23 seq63578 109 1e-18 seq52934 107 5e-18 >seq28572 Length=14732 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || || | || || |||||||| || |||| ||||| || | | ||| Sbjct 1611 CGAAGTCGCAACACCAAATGCAGCGTCGACTCTTTCTGGATATTGTAATCCGAAAGAGTT 1670 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || |||||||| ||||||||||||||||| || | ||| ||||| || ||| |||||| Sbjct 1671 CTACCATCTTCAAGCTGCTTTCCGGCGAAAATTAAACGTTGCTGATCGGGAGGGATTCCT 1730 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || ||||| ||| ||| ||||| |||||| | | ||| || || | Sbjct 1731 TCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCGCTAGGTTCGACTTCGAGA 1790 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| ||||| || | || || || || ||||| Sbjct 1791 GTAATCGTTTTACCGGTCAAGGTCTTAACGAAGATTTG 1828 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | || |||||||| || ||||| | || || || | | ||| || || ||| Sbjct 1848 AGGACTAAATGAAGAGTCGATTCTTTTTGAATATTATAATCCGAGAGAGTTCTGCCGTCT 1907 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || ||||||||||| |||||||| |||||||| ||| |||||| || || Sbjct 1908 TCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCTGGAGGAATTCCCTCCTTATCT 1967 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||| || ||||| ||||| | | || || || | ||||| || Sbjct 1968 TGGATTTTGGCCTTGACATTTTCGATTGTGTCACTAGGCTCGACTTCGAGGGTGATTGTT 2027 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | ||||| || |||||||| Sbjct 2028 TTACCTGTTAAGGTTTTGACGAAAATTTG 2056 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | || || ||||| || ||||||| ||| ||||||| | ||| ||||||||| Sbjct 2760 AGGACTAAATGAAGGGTCGATTCTTTTTGGATGTTATAGTCAGAGAGAGTTCTTCCATCT 2819 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || || |||||||||||||| || || || || |||||| ||| || Sbjct 2820 TCGAGTTGTTTGCCAGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCT 2879 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||| ||| ||| | ||||| | | || || || | || ||||| Sbjct 2880 TGTATTTTGGCCTTGACGTTTTCAATAGTGTCGCTAGGCTCAACTTCGAGTGTAATCGTT 2939 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | || || || || ||||| Sbjct 2940 TTACCAGTCAAGGTCTTGACGAAGATTTG 2968 Score = 100 bits (110), Expect = 7e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 ||| || || ||||||| ||| ||||| | | || || |||||||| || || || || Sbjct 3002 AGTAGATTCTTTTTGGATGTTATAGTCCGAAAGTGTTCTACCATCTTCGAGTTGTTTACC 3061 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT 199551 |||||| || ||||| |||||||||||| || |||||| |||||||| ||| ||| Sbjct 3062 GGCGAAAATCAGACGTTGCTGGTCCGGAGGGATGCCTTCTTTATCCTGAATTTTTGCCTT 3121 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 ||| ||| | ||||| | | || || || | ||||| || || || || | || Sbjct 3122 GACGTTTTCAATCGTGTCGCTAGGCTCGACTTCGAGAGTGATGGTTTTGCCGGTTAAGGT 3181 Query 199612 TTTCACAAAAATTTG 199626 ||| || || || || Sbjct 3182 TTTTACGAAGATCTG 3196 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 ||||| || ||||||| ||| ||||| | | ||| ||||||||||| || || || || Sbjct 2319 GTCGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTTCCATCTTCGAGTTGTTTACCA 2378 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || ||||| ||||| ||||| || || |||||| || || ||||| || ||| Sbjct 2379 GCAAAGATAAGACGTTGCTGATCAGGGGGAATTCCCTCCTTATCTTGAATTTTGGCCTTG 2438 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || ||||| ||||| | | || || || | ||||| || ||||| || | || Sbjct 2439 ACATTTTCGATCGTGTCACTAGGCTCGACCTCGAGTGTGATAGTTTTACCAGTTAAGGTC 2498 Query 199613 TTCACAAAAATTTG 199626 || || |||||||| Sbjct 2499 TTGACGAAAATTTG 2512 >seq63578 Length=26733 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | | ||| | || || || || |||||||||| ||||| || || || Sbjct 11828 CGAAGACGTAAGACCAAATGTAGGGTGGATTCCTTTTGGATATTGTAATCGCTTAACGTG 11887 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||||| || || |||||||| || | ||||||||||| || ||| ||| Sbjct 11888 CGGCCGTCTTCCAATTGTTTACCGGCGAAAATTAATCGCTGCTGGTCGGGTGGAATACCT 11947 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || |||||||| || || |||| || || | || ||||| |||||| Sbjct 11948 TCTTTGTCTTGAATCTTGGCTTTAACATTCTCGATTGTATCGGATGGCTCTACTTCCAAC 12007 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| ||||| ||||| || |||||||| Sbjct 12008 GTGATAGTTTTACCGGTGAGCGTTTTTACGAAAATTTG 12045 >seq52934 Length=6696 Score = 107 bits (118), Expect = 5e-18 Identities = 137/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 199442 TTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATG 199501 ||||||| ||||| || | | ||| || |||||||||| ||||||||||||||||| Sbjct 3968 TTTTGGATATTGTAATCGGATAGAGTTCTACCATCTTCCAATTGCTTTCCGGCGAAGATC 4027 Query 199502 AGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TTCACGGATTC 199560 | ||| |||||||| ||| || |||||| || ||||| ||| || || || ||| Sbjct 4028 AAACGTTGCTGGTCGGGAGGGATACCTTCTTTATCTTGAAT-TTTAGCTTTTACATTTTC 4086 Query 199561 GACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAA 199620 | || || | | ||| || || | |||||||| |||||||| || |||||||| || Sbjct 4087 AATAGTATCCGAAGGTTCGACTTCGAGAGTGATCGTTTTACCCGTTAGGGTTTTCACGAA 4146 Query 199621 AATTTG 199626 || || Sbjct 4147 GATCTG 4152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177707374855862