Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq28572 123 6e-23
seq63578 109 1e-18
seq52934 107 5e-18
>seq28572
Length=14732
Score = 123 bits (136), Expect = 6e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||||| || || | || || |||||||| || |||| ||||| || | | |||
Sbjct 1611 CGAAGTCGCAACACCAAATGCAGCGTCGACTCTTTCTGGATATTGTAATCCGAAAGAGTT 1670
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
|| |||||||| ||||||||||||||||| || | ||| ||||| || ||| ||||||
Sbjct 1671 CTACCATCTTCAAGCTGCTTTCCGGCGAAAATTAAACGTTGCTGATCGGGAGGGATTCCT 1730
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
||| || || ||||| ||| ||| ||||| |||||| | | ||| || || |
Sbjct 1731 TCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCGCTAGGTTCGACTTCGAGA 1790
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| ||||| ||||| || | || || || || |||||
Sbjct 1791 GTAATCGTTTTACCGGTCAAGGTCTTAACGAAGATTTG 1828
Score = 102 bits (112), Expect = 2e-16
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| | || |||||||| || ||||| | || || || | | ||| || || |||
Sbjct 1848 AGGACTAAATGAAGAGTCGATTCTTTTTGAATATTATAATCCGAGAGAGTTCTGCCGTCT 1907
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| || || ||||||||||| |||||||| |||||||| ||| |||||| || ||
Sbjct 1908 TCGAGTTGTTTTCCGGCGAAAATGAGACGTTGCTGGTCTGGAGGAATTCCCTCCTTATCT 1967
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| || || ||| || ||||| ||||| | | || || || | ||||| ||
Sbjct 1968 TGGATTTTGGCCTTGACATTTTCGATTGTGTCACTAGGCTCGACTTCGAGGGTGATTGTT 2027
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || | ||||| || ||||||||
Sbjct 2028 TTACCTGTTAAGGTTTTGACGAAAATTTG 2056
Score = 102 bits (112), Expect = 2e-16
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| | || || ||||| || ||||||| ||| ||||||| | ||| |||||||||
Sbjct 2760 AGGACTAAATGAAGGGTCGATTCTTTTTGGATGTTATAGTCAGAGAGAGTTCTTCCATCT 2819
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| || || || || |||||||||||||| || || || || |||||| ||| ||
Sbjct 2820 TCGAGTTGTTTGCCAGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCT 2879
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| || || ||| ||| ||| | ||||| | | || || || | || |||||
Sbjct 2880 TGTATTTTGGCCTTGACGTTTTCAATAGTGTCGCTAGGCTCAACTTCGAGTGTAATCGTT 2939
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || | || || || || |||||
Sbjct 2940 TTACCAGTCAAGGTCTTGACGAAGATTTG 2968
Score = 100 bits (110), Expect = 7e-16
Identities = 139/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491
||| || || ||||||| ||| ||||| | | || || |||||||| || || || ||
Sbjct 3002 AGTAGATTCTTTTTGGATGTTATAGTCCGAAAGTGTTCTACCATCTTCGAGTTGTTTACC 3061
Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT 199551
|||||| || ||||| |||||||||||| || |||||| |||||||| ||| |||
Sbjct 3062 GGCGAAAATCAGACGTTGCTGGTCCGGAGGGATGCCTTCTTTATCCTGAATTTTTGCCTT 3121
Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611
||| ||| | ||||| | | || || || | ||||| || || || || | ||
Sbjct 3122 GACGTTTTCAATCGTGTCGCTAGGCTCGACTTCGAGAGTGATGGTTTTGCCGGTTAAGGT 3181
Query 199612 TTTCACAAAAATTTG 199626
||| || || || ||
Sbjct 3182 TTTTACGAAGATCTG 3196
Score = 93.3 bits (102), Expect = 1e-13
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492
||||| || ||||||| ||| ||||| | | ||| ||||||||||| || || || ||
Sbjct 2319 GTCGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTTCCATCTTCGAGTTGTTTACCA 2378
Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552
|| ||||| ||||| ||||| || || |||||| || || ||||| || |||
Sbjct 2379 GCAAAGATAAGACGTTGCTGATCAGGGGGAATTCCCTCCTTATCTTGAATTTTGGCCTTG 2438
Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612
|| ||||| ||||| | | || || || | ||||| || ||||| || | ||
Sbjct 2439 ACATTTTCGATCGTGTCACTAGGCTCGACCTCGAGTGTGATAGTTTTACCAGTTAAGGTC 2498
Query 199613 TTCACAAAAATTTG 199626
|| || ||||||||
Sbjct 2499 TTGACGAAAATTTG 2512
>seq63578
Length=26733
Score = 109 bits (120), Expect = 1e-18
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | | ||| | || || || || |||||||||| ||||| || || ||
Sbjct 11828 CGAAGACGTAAGACCAAATGTAGGGTGGATTCCTTTTGGATATTGTAATCGCTTAACGTG 11887
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || ||||||| || || |||||||| || | ||||||||||| || ||| |||
Sbjct 11888 CGGCCGTCTTCCAATTGTTTACCGGCGAAAATTAATCGCTGCTGGTCGGGTGGAATACCT 11947
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
||| || |||||||| || || |||| || || | || ||||| ||||||
Sbjct 11948 TCTTTGTCTTGAATCTTGGCTTTAACATTCTCGATTGTATCGGATGGCTCTACTTCCAAC 12007
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || ||||| ||||| ||||| || ||||||||
Sbjct 12008 GTGATAGTTTTACCGGTGAGCGTTTTTACGAAAATTTG 12045
>seq52934
Length=6696
Score = 107 bits (118), Expect = 5e-18
Identities = 137/186 (74%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 199442 TTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATG 199501
||||||| ||||| || | | ||| || |||||||||| |||||||||||||||||
Sbjct 3968 TTTTGGATATTGTAATCGGATAGAGTTCTACCATCTTCCAATTGCTTTCCGGCGAAGATC 4027
Query 199502 AGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TTCACGGATTC 199560
| ||| |||||||| ||| || |||||| || ||||| ||| || || || |||
Sbjct 4028 AAACGTTGCTGGTCGGGAGGGATACCTTCTTTATCTTGAAT-TTTAGCTTTTACATTTTC 4086
Query 199561 GACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAA 199620
| || || | | ||| || || | |||||||| |||||||| || |||||||| ||
Sbjct 4087 AATAGTATCCGAAGGTTCGACTTCGAGAGTGATCGTTTTACCCGTTAGGGTTTTCACGAA 4146
Query 199621 AATTTG 199626
|| ||
Sbjct 4147 GATCTG 4152
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177707374855862
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |