Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq28572 120 3e-22 seq63578 93.3 5e-14 >seq28572 Length=14732 Score = 120 bits (132), Expect = 3e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 46358 TATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTG 46417 ||||| ||||| || | | |||||||||| ||||| || ||| || ||||||||| Sbjct 1596 TATTAATTGCCACCACGAAGTCGCAACACCAAATGCAGCGTCGACTCTTTCTGGATATTG 1655 Query 46418 TAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGG 46477 || || || ||||| | | || || |||||||| |||||||| || || || ||||| Sbjct 1656 TAATCCGAAAGAGTTCTACCATCTTCAAGCTGCTTTCCGGCGAAAATTAAACGTTGCTGA 1715 Query 46478 TCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTC 46537 |||| || | | || ||||| |||||| ||||| | | | |||||||| Sbjct 1716 TCGGGAGGGATTCCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCGCTA 1775 Query 46538 GATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | ||| || || | || || ||||| || |||| || ||||| ||||||||||| Sbjct 1776 GGTTCGACTTCGAGAGTAATCGTTTTACCGGTCAAGGTCTTAACGAAGATTTGCAT 1831 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| || || | |||| ||| || || ||||||||||||||||| ||||| Sbjct 3201 CCACCTCTCAATCGAAGAACCAAATGTAAAGTCGATTCCTTTTGGATATTGTAATCGGAA 3260 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || |||| ||||| ||||| || ||||| |||| || || || || | || Sbjct 3261 AGCGTTCGGCCGTCTTCGAGTTGCTTTCCAGCGAAGATCAGACGTTGTTGATCAGGAGGA 3320 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| || || ||| ||||| | | | ||| || |||| ||| || Sbjct 3321 ATACCTTCCTTATCTTGAATTTTCGCCTTGACGTTTTCGATCGTATCACTCGGTTCAACT 3380 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || | ||||||||||| || |||| |||||| || ||||| |||||||| Sbjct 3381 TCGAGGGTGATGGTTTTACCAGTCAACGTTTTTACGAAGATCTGCATTTT 3430 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| || || | ||| ||||| || || |||||||| |||||||| ||||| Sbjct 2061 CCTCCTCTCAATCGAAGCACGAGATGTAAAGTTGATTCCTTTTGAATATTGTAATCGGAG 2120 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || ||||| || |||||||| || || || || || || || | || Sbjct 2121 AGGGTTCGGCCATCTTCGAGTTGTTTGCCGGCAAAAATTAAACGTTGTTGATCTGGGGGA 2180 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| || ||| || ||||| | | | ||||| || | || || Sbjct 2181 ATTCCTTCCTTATCTTGGATTTTAGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTACT 2240 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||||||||| ||||| || |||||||| ||||||||||| Sbjct 2241 TCGAGAGTGATGGTTTTACCCGTTAGGGTTTTAACGAAGATTTGCAT 2287 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | |||| ||| || ||| || |||||||| || ||||| || Sbjct 2973 CCTCCTCTGAGACGGAGAACCAAATGTAAAGTAGATTCTTTTTGGATGTTATAGTCCGAA 3032 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | | || ||||| || || |||||||| |||| || |||||||| | || Sbjct 3033 AGTGTTCTACCATCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGG 3092 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || || ||| || || ||||| | | | ||||||||| | || || Sbjct 3093 ATGCCTTCTTTATCCTGAATTTTTGCCTTGACGTTTTCAATCGTGTCGCTAGGCTCGACT 3152 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||||||||| || | ||||| || ||||| ||||| Sbjct 3153 TCGAGAGTGATGGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 3199 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| | ||| | |||| ||| ||||| || |||||||| ||||| ||||| Sbjct 2517 CCTCCTCGGAGACGGAGAACCAAATGTAATGTCGATTCTTTTTGGATGTTGTAATCGGAA 2576 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || |||| ||||| || || |||||||| || || || || || || | || Sbjct 2577 AGAGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGTTGATCAGGGGGA 2636 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||| ||| || || ||||| | | | ||||| || | || || Sbjct 2637 ATTCCCTCCTTATCCTGAATTTTAGCCTTGACATTTTCGATGGTGTCACTGGGCTCTACT 2696 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||||||||| || || | ||||| || || || ||||| Sbjct 2697 TCGAGAGTGATGGTTTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 2743 >seq63578 Length=26733 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||||||||| ||| || ||||| |||| || | || || |||||||| Sbjct 11858 TCCTTTTGGATATTGTAATCGCTTAACGTGCGGCCGTCTTCCAATTGTTTACCGGCGAAA 11917 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || || ||||||||||||| || | | || ||||| ||||| || | || Sbjct 11918 ATTAATCGCTGCTGGTCGGGTGGAATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTC 11977 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || ||| | || || |||| |||||| ||||| || || |||||||| || Sbjct 11978 TCGATTGTATCGGATGGCTCTACTTCCAACGTGATAGTTTTACCGGTGAGCGTTTTTACG 12037 Query 46583 AAGATTTGCAT 46593 || |||||||| Sbjct 12038 AAAATTTGCAT 12048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564670434324720