Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq28572 120 3e-22
seq63578 93.3 5e-14
>seq28572
Length=14732
Score = 120 bits (132), Expect = 3e-22
Identities = 168/236 (71%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 46358 TATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTG 46417
||||| ||||| || | | |||||||||| ||||| || ||| || |||||||||
Sbjct 1596 TATTAATTGCCACCACGAAGTCGCAACACCAAATGCAGCGTCGACTCTTTCTGGATATTG 1655
Query 46418 TAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGG 46477
|| || || ||||| | | || || |||||||| |||||||| || || || |||||
Sbjct 1656 TAATCCGAAAGAGTTCTACCATCTTCAAGCTGCTTTCCGGCGAAAATTAAACGTTGCTGA 1715
Query 46478 TCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTC 46537
|||| || | | || ||||| |||||| ||||| | | | ||||||||
Sbjct 1716 TCGGGAGGGATTCCTTCTTTGTCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCGCTA 1775
Query 46538 GATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| ||| || || | || || ||||| || |||| || ||||| |||||||||||
Sbjct 1776 GGTTCGACTTCGAGAGTAATCGTTTTACCGGTCAAGGTCTTAACGAAGATTTGCAT 1831
Score = 118 bits (130), Expect = 1e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| ||||| || || | |||| ||| || || ||||||||||||||||| |||||
Sbjct 3201 CCACCTCTCAATCGAAGAACCAAATGTAAAGTCGATTCCTTTTGGATATTGTAATCGGAA 3260
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| || || |||| ||||| ||||| || ||||| |||| || || || || | ||
Sbjct 3261 AGCGTTCGGCCGTCTTCGAGTTGCTTTCCAGCGAAGATCAGACGTTGTTGATCAGGAGGA 3320
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| | ||||| || || ||| ||||| | | | ||| || |||| ||| ||
Sbjct 3321 ATACCTTCCTTATCTTGAATTTTCGCCTTGACGTTTTCGATCGTATCACTCGGTTCAACT 3380
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596
|| | ||||||||||| || |||| |||||| || ||||| ||||||||
Sbjct 3381 TCGAGGGTGATGGTTTTACCAGTCAACGTTTTTACGAAGATCTGCATTTT 3430
Score = 113 bits (124), Expect = 5e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|||||||| || || | ||| ||||| || || |||||||| |||||||| |||||
Sbjct 2061 CCTCCTCTCAATCGAAGCACGAGATGTAAAGTTGATTCCTTTTGAATATTGTAATCGGAG 2120
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| || || | || ||||| || |||||||| || || || || || || || | ||
Sbjct 2121 AGGGTTCGGCCATCTTCGAGTTGTTTGCCGGCAAAAATTAAACGTTGTTGATCTGGGGGA 2180
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| | ||||| || ||| || ||||| | | | ||||| || | || ||
Sbjct 2181 ATTCCTTCCTTATCTTGGATTTTAGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTACT 2240
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| | ||||||||||| ||||| || |||||||| |||||||||||
Sbjct 2241 TCGAGAGTGATGGTTTTACCCGTTAGGGTTTTAACGAAGATTTGCAT 2287
Score = 104 bits (114), Expect = 3e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|||||||| | ||| | |||| ||| || ||| || |||||||| || ||||| ||
Sbjct 2973 CCTCCTCTGAGACGGAGAACCAAATGTAAAGTAGATTCTTTTTGGATGTTATAGTCCGAA 3032
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| || | | || ||||| || || |||||||| |||| || |||||||| | ||
Sbjct 3033 AGTGTTCTACCATCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGG 3092
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| || || || ||| || || ||||| | | | ||||||||| | || ||
Sbjct 3093 ATGCCTTCTTTATCCTGAATTTTTGCCTTGACGTTTTCAATCGTGTCGCTAGGCTCGACT 3152
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| | |||||||||||||| || | ||||| || ||||| |||||
Sbjct 3153 TCGAGAGTGATGGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 3199
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||||| | ||| | |||| ||| ||||| || |||||||| ||||| |||||
Sbjct 2517 CCTCCTCGGAGACGGAGAACCAAATGTAATGTCGATTCTTTTTGGATGTTGTAATCGGAA 2576
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
||||| || |||| ||||| || || |||||||| || || || || || || | ||
Sbjct 2577 AGAGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGTTGATCAGGGGGA 2636
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| | |||||| ||| || || ||||| | | | ||||| || | || ||
Sbjct 2637 ATTCCCTCCTTATCCTGAATTTTAGCCTTGACATTTTCGATGGTGTCACTGGGCTCTACT 2696
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| | ||||||||||| || || | ||||| || || || |||||
Sbjct 2697 TCGAGAGTGATGGTTTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 2743
>seq63578
Length=26733
Score = 93.3 bits (102), Expect = 5e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||||||||||||||| ||| || ||||| |||| || | || || ||||||||
Sbjct 11858 TCCTTTTGGATATTGTAATCGCTTAACGTGCGGCCGTCTTCCAATTGTTTACCGGCGAAA 11917
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| || ||||||||||||| || | | || ||||| ||||| || | ||
Sbjct 11918 ATTAATCGCTGCTGGTCGGGTGGAATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTC 11977
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | || ||| | || || |||| |||||| ||||| || || |||||||| ||
Sbjct 11978 TCGATTGTATCGGATGGCTCTACTTCCAACGTGATAGTTTTACCGGTGAGCGTTTTTACG 12037
Query 46583 AAGATTTGCAT 46593
|| ||||||||
Sbjct 12038 AAAATTTGCAT 12048
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 564670434324720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |