Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq28572 172 1e-37 seq63578 152 1e-31 seq52934 149 1e-30 seq46443 102 2e-16 seq77090 96.9 8e-15 >seq28572 Length=14732 Score = 172 bits (190), Expect = 1e-37 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||| || | || || || |||||||| || ||||||||||| | ||||||||| Sbjct 1614 AGTCGCAACACCAAATGCAGCGTCGACTCTTTCTGGATATTGTAATCCGAAAGAGTTCTA 1673 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| |||||||| || ||||| || | ||||| || || ||||| || |||||| Sbjct 1674 CCATCTTCAAGCTGCTTTCCGGCGAAAATTAAACGTTGCTGATCGGGAGGGATTCCTTCT 1733 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||| || || ||||||||| || |||||||| | ||| ||||| || ||| Sbjct 1734 TTGTCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCGCTAGGTTCGACTTCGAGAGTA 1793 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||| || || ||||| || || ||||| | |||||| Sbjct 1794 ATCGTTTTACCGGTCAAGGTCTTAACGAAGATTTGCAT 1831 Score = 165 bits (182), Expect = 2e-35 Identities = 159/203 (78%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || || ||||| ||||||||||||| ||| |||| || |||||||| ||||| || Sbjct 3230 AGTCGATTCCTTTTGGATATTGTAATCGGAAAGCGTTCGGCCGTCTTCGAGTTGCTTTCC 3289 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 |||||||| || |||||||| || |||||||| ||||| || ||||||||||| ||| Sbjct 3290 AGCGAAGATCAGACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGAATTTTCGCCTT 3349 Query 195063 GACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 |||||| || || || || ||| ||| ||||| ||||| | || || || ||||| Sbjct 3350 GACGTTTTCGATCGTATC---ACTCGGTTCAACTTCGAGGGTGATGGTTTTACCAGTCAA 3406 Query 195120 AGTTTTTACGAACACTTGCATTT 195142 ||||||||||| | ||||||| Sbjct 3407 CGTTTTTACGAAGATCTGCATTT 3429 Score = 159 bits (176), Expect = 8e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| || |||||||||||||| ||||| | |||||||| || |||||||| || Sbjct 1857 TGAAGAGTCGATTCTTTTTGAATATTATAATCCGAGAGAGTTCTGCCGTCTTCGAGTTGT 1916 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || ||||| || || ||||| |||||||||||||| || || || ||||| ||||| Sbjct 1917 TTTCCGGCGAAAATGAGACGTTGCTGGTCTGGAGGAATTCCCTCCTTATCTTGGATTTTG 1976 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||| || || || ||||| | || ||||| ||||| | || || ||||| Sbjct 1977 GCCTTGACATTTTCGATTGTGTCACTAGGCTCGACTTCGAGGGTGATTGTTTTACCTGTT 2036 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || ||||| ||||| | |||||| Sbjct 2037 AAGGTTTTGACGAAAATTTGCAT 2059 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||| | || | ||| || |||||||| || || || || | ||| || Sbjct 2978 TCTGAGACGGAGAACCAAATGTAAAGTAGATTCTTTTTGGATGTTATAGTCCGAAAGTGT 3037 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||||||||| || ||||| ||||| || || ||||| ||||| ||||| ||||| Sbjct 3038 TCTACCATCTTCGAGTTGTTTACCGGCGAAAATCAGACGTTGCTGGTCCGGAGGGATGCC 3097 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| || ||||||||| ||||||||| ||||| ||||| | || ||||| || Sbjct 3098 TTCTTTATCCTGAATTTTTGCCTTGACGTTTTCAATCGTGTCGCTAGGCTCGACTTCGAG 3157 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || || || || ||||||||||| | ||||| Sbjct 3158 AGTGATGGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 3199 Score = 156 bits (172), Expect = 9e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || || |||||||| || || || || | |||||||| ||||||||||| || Sbjct 2769 TGAAGGGTCGATTCTTTTTGGATGTTATAGTCAGAGAGAGTTCTTCCATCTTCGAGTTGT 2828 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||| || |||||||| || || ||||| || ||||| ||||| ||||| Sbjct 2829 TTGCCAGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCTTGTATTTTG 2888 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||||||| ||||| ||||| | || ||||| || |||| ||| || || ||| Sbjct 2889 GCCTTGACGTTTTCAATAGTGTCGCTAGGCTCAACTTCGAGTGTAATCGTTTTACCAGTC 2948 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 || || || ||||| | ||||||| Sbjct 2949 AAGGTCTTGACGAAGATTTGCATT 2972 Score = 136 bits (150), Expect = 9e-27 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || | ||| || || ||||||||||||||||||| || |||| ||||||||| Sbjct 2079 ACGAGATGTAAAGTTGATTCCTTTTGAATATTGTAATCGGAGAGGGTTCGGCCATCTTCG 2138 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || || || | |||||||| ||||| ||||| ||||| || ||||| Sbjct 2139 AGTTGTTTGCCGGCAAAAATTAAACGTTGTTGATCTGGGGGAATTCCTTCCTTATCTTGG 2198 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| ||||||||| || |||||||| ||| || ||||| || || | || Sbjct 2199 ATTTTAGCCTTGACGTTTTCGATGGTGTC---ACTGGGCTCTACTTCGAGAGTGATGGTT 2255 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | ||||| ||||| | |||||| Sbjct 2256 TTACCCGTTAGGGTTTTAACGAAGATTTGCAT 2287 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || |||||||| || || || || | ||||||||| ||||||||||| || ||||| Sbjct 2319 GTCGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTTCCATCTTCGAGTTGTTTACCA 2378 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || |||||||| ||||| || || || ||||| || || || ||||||||||| |||| Sbjct 2379 GCAAAGATAAGACGTTGCTGATCAGGGGGAATTCCCTCCTTATCTTGAATTTTGGCCTTG 2438 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || || || ||||| | || || || || || | || || || || || || Sbjct 2439 ACATTTTCGATCGTGTCACTAGGCTCGACCTCGAGTGTGATAGTTTTACCAGTTAAGGTC 2498 Query 195124 TTTACGAACACTTGCATT 195141 || ||||| | ||||||| Sbjct 2499 TTGACGAAAATTTGCATT 2516 >seq63578 Length=26733 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||| ||||| ||||| || ||||| ||||| | |||||||| | ||| Sbjct 11617 GTGAAGAGTGGATTCTTTCTGAATGTTATAATCACTCAGAGTACGGCCATCTTCCAACTG 11676 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| || ||||| | |||||| |||||||| || ||||||||||| || |||||||| Sbjct 11677 TTTACCGGCAAAGATCAATCGTTGCTGGTCTGGTGGTATGCCTTCTTTATCCTGAATTTT 11736 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||| || |||||||| || || |||||| || | ||| | || ||||| || Sbjct 11737 AGCTTTGACATTTTCAATGGTATCGGACGGTTCCACCTCCAAGGTTATGGTTTTTCCAGT 11796 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | |||||| Sbjct 11797 GAGCGTTTTAACGAAAATTTGCAT 11820 Score = 147 bits (162), Expect = 5e-30 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 |||||| | ||||| |||||||| || |||||||| |||||| | || | ||||| Sbjct 11380 CAAAACCAAATGAAGGGTGGACTCCTTCTGAATATTATAATCGCTTAACGTGCGGCCATC 11439 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||||| || ||||| || | || || ||||| || || || |||||||| || Sbjct 11440 TTCCAATTGCTTTCCAGCGAAAATCAATCTCTGCTGGTCAGGCGGGATACCTTCTTTATC 11499 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||||||| || |||||||| ||||| || || ||| ||||| | ||||| || Sbjct 11500 TTGAATTTTAGCTTTCACGTTCTCGATGGTATCGGACGGTTCGACTTCCAAGGTAATAGT 11559 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| || || |||||||| ||||| | ||||||| Sbjct 11560 CTTGCCGGTTAAAGTTTTCACGAAAATTTGCATT 11593 Score = 127 bits (140), Expect = 5e-24 Identities = 143/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCG-GCAAGAGTTCTCCCATC 194987 ||||| | ||||||||||| |||||||| ||||| |||||| |||| || | || || Sbjct 12293 AAAACTAAATGAAGAGTGGATTCTTTTTGGATATTATAATCGCTCAAG-GTACGACCGTC 12351 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | || ||||| ||||| || | || || ||||| || || |||||||||||||| Sbjct 12352 TTCCAATTGTTTACCGGCGAAAATTAATCTCTGCTGGTCGGGTGGGATGCCTTCTTTGTC 12411 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||||||| || ||||| ||||| || || || ||||||||| | ||| | || Sbjct 12412 TTGAATTTTGGCTTTCACGTTTTCAATAGTATCAGACGGTTCCACTTCCAAGGTGATAGT 12471 Query 195108 CTTTCCTGT 195116 ||||| || Sbjct 12472 TTTTCCGGT 12480 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || || ||||||||||||||||| ||| | || | |||||||| | || Sbjct 12530 TGAAGCGTCGATTCTTTTTGAATATTGTAGTCGCTCAATGTGCGGCCATCTTCCAATTGT 12589 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || || || | ||||| ||||| || || || |||||||| |||||||| || Sbjct 12590 TTACCGGCAAAAATTAACCGTTGCTGGTCAGGTGGGATTCCTTCTTTATCTTGAATCTTG 12649 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||||| || || || || || ||| ||||| | |||| || ||||| || Sbjct 12650 GCTTTGACGTTTTCGATCGTATCGGATGGTTCAACTTCCAAAGTAATGGTTTTTCCGGTA 12709 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | |||||||||||| | |||||| Sbjct 12710 AGAGTTTTTACGAAGATTTGCAT 12732 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || ||||| || ||||| |||||||||||| | || | || ||||| | || Sbjct 11846 TGTAGGGTGGATTCCTTTTGGATATTGTAATCGCTTAACGTGCGGCCGTCTTCCAATTGT 11905 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| ||||| || | ||| || ||||| || ||||| ||||||||||||||||| || Sbjct 11906 TTACCGGCGAAAATTAATCGCTGCTGGTCGGGTGGAATACCTTCTTTGTCTTGAATCTTG 11965 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || ||||| || || || || || ||||| | || | || || || || Sbjct 11966 GCTTTAACATTCTCGATTGTATCGGATGGCTCTACTTCCAACGTGATAGTTTTACCGGTG 12025 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||||||||||| | |||||| Sbjct 12026 AGCGTTTTTACGAAAATTTGCAT 12048 >seq52934 Length=6696 Score = 149 bits (164), Expect = 1e-30 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 ||||||| ||||||||||||| |||||||| |||||||| | ||||| || ||||||| Sbjct 3966 CTTTTTGGATATTGTAATCGGATAGAGTTCTACCATCTTCCAATTGCTTTCCGGCGAAGA 4025 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | | ||||| ||||| ||||| || |||||||| ||||||||||| || || || | Sbjct 4026 TCAAACGTTGCTGGTCGGGAGGGATACCTTCTTTATCTTGAATTTTAGCTTTTACATTTT 4085 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 |||| || |||||| ||| ||||| || || | ||| || || || | ||||| |||| Sbjct 4086 CAATAGTATCCGAAGGTTCGACTTCGAGAGTGATCGTTTTACCCGTTAGGGTTTTCACGA 4145 Query 195131 ACACTTGCAT 195140 | | ||||| Sbjct 4146 AGATCTGCAT 4155 >seq46443 Length=17015 Score = 102 bits (112), Expect = 2e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | |||||| || | || ||||| || |||||||| || || ||||||| ||| || Sbjct 12700 TCTCAATCTCAATACTAAATGCAGAGTAGATTCTTTTTGGATGTTATAATCGGAAAGGGT 12759 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||||| || ||||| || || || | ||||||||||| ||||||||||| Sbjct 12760 ACGTCCATCTTCGAGTTGTTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATGCC 12819 Query 195039 T 195039 | Sbjct 12820 T 12820 >seq77090 Length=20911 Score = 96.9 bits (106), Expect = 8e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || |||||||| || |||||||| | |||||||| |||||||| || |||||||| Sbjct 10602 GTCGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCGTCCATCTTCAAGTTGCTTACCA 10543 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 ||||| || | |||||||| || |||||||||||| Sbjct 10542 GCGAAAATCAAACGTTGTTGATCAGGAGGAATGCCT 10507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108338894280062