Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq13914 141 1e-28
seq7792 131 2e-25
seq19381 125 8e-24
seq59517 111 2e-19
>seq13914
Length=11729
Score = 141 bits (156), Expect = 1e-28
Identities = 164/221 (74%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044
|||||||| ||| |||||||| || || | |||||||| || || ||||||||
Sbjct 7888 TCGTCTCTTGATATTAATTCATTGCTGAAAGTCAGTCCAGGCATTAGGCCCCTTTTTTTA 7947
Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104
| ||| ||||| | |||||| |||||||||||| |||||||| || || ||||||||
Sbjct 7948 AGCCAAAATATCGCAGCAAAACTTCCAGAAAAGAAAATACCTTCGACAGCAGCAAAAGCT 8007
Query 19105 ACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCC 19164
| | |||||||||| || | || | || | || ||||| |||| ||||| |||||
Sbjct 8008 ATGATTCTTTCTCCAAAAGTCGCGTTTTTGTCATTTATCCACTTCAACGCCCAGTCAGCT 8067
Query 19165 TTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205
|| | || ||||| ||||| || || || | ||| |||||
Sbjct 8068 TTTCTCTTAACACACGGCATGGTTTCAATGGCATTGAATAG 8108
Score = 134 bits (148), Expect = 2e-26
Identities = 134/174 (77%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283
|||||||| || | || ||||| || ||||||||||||||||| | ||| || || |
Sbjct 8198 ATCTTTAATGTAAGTGTCAATCAACAAGCTGTACATTTCTGAATGTACATTCTCAATTGT 8257
Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTC 19343
|| ||||||||||||||| |||| ||||| | || |||||||| |||| | ||
Sbjct 8258 GATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATTTGTACTTCTTGGAAAAAACGCTC 8317
Query 19344 GACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATG 19397
||| |||||||||||||| || |||||| || || ||||||||||| || ||
Sbjct 8318 GACTAAATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTG 8371
Score = 86.0 bits (94), Expect = 7e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 18613 TAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTCATTACTCCCATTTTT 18672
||||||||| ||||||| || ||| || | | | | ||| ||||| ||||
Sbjct 7355 TAAAAATCAGCATCCAATTTGAATTCATTTTCACCCGTTGGAAACATGACTCCACTTTTC 7414
Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732
| |||||| | |||||||| ||||||||||| ||||| || | || |||||| ||||
Sbjct 7415 TTGTATTCGCCTACTCTTTTCTCAAAGAAATTCGTTTTACCGTTTAGAGATATATTTTCC 7474
Query 18733 ATAAAATCAAATGGATT 18749
|||||||| ||||| ||
Sbjct 7475 ATAAAATCGAATGGGTT 7491
>seq7792
Length=27931
Score = 131 bits (144), Expect = 2e-25
Identities = 128/165 (78%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283
||| || || |||| ||||||||||||||||||||||||||||||| ||| ||||| |
Sbjct 19485 ATCCTTGACGTATGTGTCTATCAATAAACTGTACATTTCTGAATGAACATTCTCTATGGT 19544
Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTC 19343
|||||||||||||| || |||| ||||| | || || ||||| | | || | ||
Sbjct 19545 GATCTGAAATCCGTAGAAGAATCTAGCTTCGGGGATTTGAACTTCTTGAAAGAAGCGCTC 19604
Query 19344 GACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGC 19388
||| ||||||||||| || || || ||| || || ||||||||
Sbjct 19605 GACTAAATTTTCATTCACGATACCGTCAGATGCGGCGAAAAATGC 19649
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 19460 CTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCAC 19519
||||||||||| |||||||||| ||||| ||||| |||||| ||||| ||| ||||||
Sbjct 19789 CTACTTCTTCAGCTGTCCAAAATGAAGCTTCTGCCTTTTTAAACATGGCCCAAATATCAT 19848
Query 19520 GATATTGTATAGGAAATATAACAAATCTA 19548
|||| || || | ||| |||||||||
Sbjct 19849 CGTATTTAATTGGCATTATTACAAATCTA 19877
>seq19381
Length=19756
Score = 125 bits (138), Expect = 8e-24
Identities = 231/336 (69%), Gaps = 2/336 (1%)
Strand=Plus/Minus
Query 48117 TATAACTTCTCAAATTCATCCCCATACACATT-ATCTAACCCAGGACATTCATTAGGACA 48175
|| |||| || ||||| || || || ||| | | || || ||||||| | | |||||
Sbjct 9246 TACAACTCGTCGAATTCTTCACCGTA-ACAGTCAAACAATCCGGGACATTGACTGGGACA 9188
Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235
|||||| ||| | ||||| |||| || || |||| ||| || || ||||| |
Sbjct 9187 CATCAAACTCCATTTTTCATCTTTTTCGACCCTTCTCATGAATTCGTCGGGGATCCACAT 9128
Query 48236 AGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAG 48295
|| |||||||||||||| | ||||| || ||| ||| || || || |
Sbjct 9127 TGCGTAAAATAAATCCCTAGCGCGAGACTCTTCTTTACCAGAATTTTTTCGCAGCTCTAA 9068
Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355
||| || | ||||| |||||||| ||||| || || || || | |||| |||| |||
Sbjct 9067 AAATTCAAAAATATCCGCATGCCAAGGTTCCAAGTAAATAGCAAAAGCACCCGGTCTTTT 9008
Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415
|| |||||||| || | |||||||| || || || || || | | ||| || | |
Sbjct 9007 GTTGCCTCCTTGGTCCACGTATCTGGCTGTGTTATTGTATACGCGAAGCATCGGAATTAG 8948
Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACT 48451
||||||||||| || || ||||| | ||||| ||
Sbjct 8947 ACCATTTGATACGCCGTTTGTTCCAGCGATATAGCT 8912
Score = 95.1 bits (104), Expect = 1e-14
Identities = 123/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 48608 ATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTC 48667
||| ||||| || ||||| |||||| |||| ||||| || | || ||||| |||||
Sbjct 8690 ATTGAATAAGGTAGGAGAAGCATGAGTAAAATATTTCAGGGACATTAAATTATAGGTTTC 8631
Query 48668 AATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTG 48727
||||||||| || ||||| || ||||| | | || ||||| ||||| | ||
Sbjct 8630 AATAACAGAGTCGATATCTTCGCCGTGAATACCAACGGCAACTCGCATCAACATGTGCTG 8571
Query 48728 AGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777
|| | ||| ||||| || || |||||||| ||||| ||||||||||
Sbjct 8570 TGGACGTTCGACAATACGATTGTTGATTTTCAATAGATAGGATTTTTCCA 8521
>seq59517
Length=19559
Score = 111 bits (122), Expect = 2e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 48353 TTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGAC 48412
|||||| ||||||||||| | |||||| || | || | || | |||||| || ||
Sbjct 13342 TTTATTGCCTCCTTGATCGACATATCTTGCTACGCTATTGAACACACGTAACATGGGCAC 13283
Query 48413 AATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACT 48472
||||||||| |||| |||||||| || | ||||| || | |||||| ||||||
Sbjct 13282 AATACCATTAGATACTCCATTGGTACCAGTTATATAGCTATTAGTAGCTCGAATATTATG 13223
Query 48473 AAT-TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTAT 48531
|| || | | |||| ||||| || ||| || || |||||||| |||||||||
Sbjct 13222 TATGTGTAGT-CCTACGCCACCAGCGGATTTGGAGATCAGAGCACATGTAGTAAGGGTAT 13164
Query 48532 CATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581
| |||| ||||| |||||||| || ||| | ||||||||||||
Sbjct 13163 TAAAAATACCTTCAATACTATCGTCCTCCATGGCGATGAGAAAACAACTA 13114
Score = 96.9 bits (106), Expect = 4e-15
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
|||||||||||||| | |||| | |||| || || ||||| ||||| | ||||
Sbjct 14726 TGAAATTCTCCAGACAAGACTCGTCTAGTATACATGTTTGAAGTATAAGGTTCGAAAGAT 14667
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
||||||||||| |||||||||||||| || || |||||||| | |||| | || |
Sbjct 14666 TCATTATTTCCTAAAATTTGAGCAGTGGAAGCGGTAGGCATAGGAGCAAGAAGTAGAGAA 14607
Query 47448 TTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGAT 47507
||||| || || |||| || || | | |||||||||| | ||| |||
Sbjct 14606 TTTCTAACGCCGTATTGTTTAATTTTTTCTTTTAACGATGTCCAATCCCATAAATCAGAT 14547
Query 47508 GGAACAACATTCCAAAAATCATATTGAAGAAT 47539
|| || ||||| | ||| || || | |||
Sbjct 14546 GGCTGGACGTTCCACATATCGTACTGCAAAAT 14515
Score = 95.1 bits (104), Expect = 1e-14
Identities = 82/102 (80%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599
||||||||| | ||||| || || || |||| ||||||||| | | ||| || |||||
Sbjct 14438 TCCTTTACTAACTGGAGATCCTTTGTACGTTTCATAAGGACCATTTTCTTTGGCAAGTTC 14379
Query 47600 ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATAT 47641
||| ||||||||||| |||| ||||| || |||||||||||
Sbjct 14378 ACAGCTTGCTTCCAAAGCACCGTAATAAATAGTTTCAAATAT 14337
Score = 93.3 bits (102), Expect = 5e-14
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 48618 GTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAA 48677
|| || || || ||| | || || |||| |||||||| ||||| |||||||| | |
Sbjct 13007 GTAGGCGAAGCGTGAGTGAAATATCTCTCCGATAACAAGTTATAAGTTTCAATCGCTGCG 12948
Query 48678 TCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA 48737
|| ||||| ||| || |||| || || ||||| ||||||| ||| || | |||
Sbjct 12947 TCGATATCTTCAGCATGAATTCCTACAGCAACTCGCATCAACATATGTTGTGGGCGTTCT 12888
Query 48738 ACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGT 48781
|||| ||| ||||||||||| | ||| ||||||||||| ||
Sbjct 12887 ACAACTTTTCCGTTTATTTTCAATAAATACGATTTTTCCAAAGT 12844
Score = 93.3 bits (102), Expect = 5e-14
Identities = 107/143 (75%), Gaps = 4/143 (3%)
Strand=Plus/Minus
Query 47906 TACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGT 47965
|||||||| ||| | |||||| | ||||||| ||| | ||||| || ||| |||||
Sbjct 13922 TACCTCATCAGGAGCACTATATTCGACGATTTCAGTACACAAATTACTACTTTTAATAGT 13863
Query 47966 ACCCAAATTTTGATGATT--ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGT 48023
|| |||||||||||||| ||| | ||||| || || ||||| | ||| |||||
Sbjct 13862 TCCTAAATTTTGATGATTGGATTTTC--TATTACAGGCATCTTTGTACAACATGTAAGGT 13805
Query 48024 GTTCCAGTTTCTATCTGAGATTC 48046
||||| ||||| || ||||| ||
Sbjct 13804 GTTCCTGTTTCAATTTGAGAGTC 13782
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561543979025040
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