Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq13914 141 1e-28 seq7792 131 2e-25 seq19381 125 8e-24 seq59517 111 2e-19 >seq13914 Length=11729 Score = 141 bits (156), Expect = 1e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 |||||||| ||| |||||||| || || | |||||||| || || |||||||| Sbjct 7888 TCGTCTCTTGATATTAATTCATTGCTGAAAGTCAGTCCAGGCATTAGGCCCCTTTTTTTA 7947 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||| ||||| | |||||| |||||||||||| |||||||| || || |||||||| Sbjct 7948 AGCCAAAATATCGCAGCAAAACTTCCAGAAAAGAAAATACCTTCGACAGCAGCAAAAGCT 8007 Query 19105 ACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCC 19164 | | |||||||||| || | || | || | || ||||| |||| ||||| ||||| Sbjct 8008 ATGATTCTTTCTCCAAAAGTCGCGTTTTTGTCATTTATCCACTTCAACGCCCAGTCAGCT 8067 Query 19165 TTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 || | || ||||| ||||| || || || | ||| ||||| Sbjct 8068 TTTCTCTTAACACACGGCATGGTTTCAATGGCATTGAATAG 8108 Score = 134 bits (148), Expect = 2e-26 Identities = 134/174 (77%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||||||| || | || ||||| || ||||||||||||||||| | ||| || || | Sbjct 8198 ATCTTTAATGTAAGTGTCAATCAACAAGCTGTACATTTCTGAATGTACATTCTCAATTGT 8257 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTC 19343 || ||||||||||||||| |||| ||||| | || |||||||| |||| | || Sbjct 8258 GATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATTTGTACTTCTTGGAAAAAACGCTC 8317 Query 19344 GACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATG 19397 ||| |||||||||||||| || |||||| || || ||||||||||| || || Sbjct 8318 GACTAAATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTG 8371 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 18613 TAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTCATTACTCCCATTTTT 18672 ||||||||| ||||||| || ||| || | | | | ||| ||||| |||| Sbjct 7355 TAAAAATCAGCATCCAATTTGAATTCATTTTCACCCGTTGGAAACATGACTCCACTTTTC 7414 Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 | |||||| | |||||||| ||||||||||| ||||| || | || |||||| |||| Sbjct 7415 TTGTATTCGCCTACTCTTTTCTCAAAGAAATTCGTTTTACCGTTTAGAGATATATTTTCC 7474 Query 18733 ATAAAATCAAATGGATT 18749 |||||||| ||||| || Sbjct 7475 ATAAAATCGAATGGGTT 7491 >seq7792 Length=27931 Score = 131 bits (144), Expect = 2e-25 Identities = 128/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 ||| || || |||| ||||||||||||||||||||||||||||||| ||| ||||| | Sbjct 19485 ATCCTTGACGTATGTGTCTATCAATAAACTGTACATTTCTGAATGAACATTCTCTATGGT 19544 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTC 19343 |||||||||||||| || |||| ||||| | || || ||||| | | || | || Sbjct 19545 GATCTGAAATCCGTAGAAGAATCTAGCTTCGGGGATTTGAACTTCTTGAAAGAAGCGCTC 19604 Query 19344 GACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGC 19388 ||| ||||||||||| || || || ||| || || |||||||| Sbjct 19605 GACTAAATTTTCATTCACGATACCGTCAGATGCGGCGAAAAATGC 19649 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 19460 CTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCAC 19519 ||||||||||| |||||||||| ||||| ||||| |||||| ||||| ||| |||||| Sbjct 19789 CTACTTCTTCAGCTGTCCAAAATGAAGCTTCTGCCTTTTTAAACATGGCCCAAATATCAT 19848 Query 19520 GATATTGTATAGGAAATATAACAAATCTA 19548 |||| || || | ||| ||||||||| Sbjct 19849 CGTATTTAATTGGCATTATTACAAATCTA 19877 >seq19381 Length=19756 Score = 125 bits (138), Expect = 8e-24 Identities = 231/336 (69%), Gaps = 2/336 (1%) Strand=Plus/Minus Query 48117 TATAACTTCTCAAATTCATCCCCATACACATT-ATCTAACCCAGGACATTCATTAGGACA 48175 || |||| || ||||| || || || ||| | | || || ||||||| | | ||||| Sbjct 9246 TACAACTCGTCGAATTCTTCACCGTA-ACAGTCAAACAATCCGGGACATTGACTGGGACA 9188 Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235 |||||| ||| | ||||| |||| || || |||| ||| || || ||||| | Sbjct 9187 CATCAAACTCCATTTTTCATCTTTTTCGACCCTTCTCATGAATTCGTCGGGGATCCACAT 9128 Query 48236 AGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAG 48295 || |||||||||||||| | ||||| || ||| ||| || || || | Sbjct 9127 TGCGTAAAATAAATCCCTAGCGCGAGACTCTTCTTTACCAGAATTTTTTCGCAGCTCTAA 9068 Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355 ||| || | ||||| |||||||| ||||| || || || || | |||| |||| ||| Sbjct 9067 AAATTCAAAAATATCCGCATGCCAAGGTTCCAAGTAAATAGCAAAAGCACCCGGTCTTTT 9008 Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415 || |||||||| || | |||||||| || || || || || | | ||| || | | Sbjct 9007 GTTGCCTCCTTGGTCCACGTATCTGGCTGTGTTATTGTATACGCGAAGCATCGGAATTAG 8948 Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACT 48451 ||||||||||| || || ||||| | ||||| || Sbjct 8947 ACCATTTGATACGCCGTTTGTTCCAGCGATATAGCT 8912 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 48608 ATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTC 48667 ||| ||||| || ||||| |||||| |||| ||||| || | || ||||| ||||| Sbjct 8690 ATTGAATAAGGTAGGAGAAGCATGAGTAAAATATTTCAGGGACATTAAATTATAGGTTTC 8631 Query 48668 AATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTG 48727 ||||||||| || ||||| || ||||| | | || ||||| ||||| | || Sbjct 8630 AATAACAGAGTCGATATCTTCGCCGTGAATACCAACGGCAACTCGCATCAACATGTGCTG 8571 Query 48728 AGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 || | ||| ||||| || || |||||||| ||||| |||||||||| Sbjct 8570 TGGACGTTCGACAATACGATTGTTGATTTTCAATAGATAGGATTTTTCCA 8521 >seq59517 Length=19559 Score = 111 bits (122), Expect = 2e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 48353 TTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGAC 48412 |||||| ||||||||||| | |||||| || | || | || | |||||| || || Sbjct 13342 TTTATTGCCTCCTTGATCGACATATCTTGCTACGCTATTGAACACACGTAACATGGGCAC 13283 Query 48413 AATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACT 48472 ||||||||| |||| |||||||| || | ||||| || | |||||| |||||| Sbjct 13282 AATACCATTAGATACTCCATTGGTACCAGTTATATAGCTATTAGTAGCTCGAATATTATG 13223 Query 48473 AAT-TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTAT 48531 || || | | |||| ||||| || ||| || || |||||||| ||||||||| Sbjct 13222 TATGTGTAGT-CCTACGCCACCAGCGGATTTGGAGATCAGAGCACATGTAGTAAGGGTAT 13164 Query 48532 CATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 | |||| ||||| |||||||| || ||| | |||||||||||| Sbjct 13163 TAAAAATACCTTCAATACTATCGTCCTCCATGGCGATGAGAAAACAACTA 13114 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 |||||||||||||| | |||| | |||| || || ||||| ||||| | |||| Sbjct 14726 TGAAATTCTCCAGACAAGACTCGTCTAGTATACATGTTTGAAGTATAAGGTTCGAAAGAT 14667 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| |||||||||||||| || || |||||||| | |||| | || | Sbjct 14666 TCATTATTTCCTAAAATTTGAGCAGTGGAAGCGGTAGGCATAGGAGCAAGAAGTAGAGAA 14607 Query 47448 TTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGAT 47507 ||||| || || |||| || || | | |||||||||| | ||| ||| Sbjct 14606 TTTCTAACGCCGTATTGTTTAATTTTTTCTTTTAACGATGTCCAATCCCATAAATCAGAT 14547 Query 47508 GGAACAACATTCCAAAAATCATATTGAAGAAT 47539 || || ||||| | ||| || || | ||| Sbjct 14546 GGCTGGACGTTCCACATATCGTACTGCAAAAT 14515 Score = 95.1 bits (104), Expect = 1e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599 ||||||||| | ||||| || || || |||| ||||||||| | | ||| || ||||| Sbjct 14438 TCCTTTACTAACTGGAGATCCTTTGTACGTTTCATAAGGACCATTTTCTTTGGCAAGTTC 14379 Query 47600 ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATAT 47641 ||| ||||||||||| |||| ||||| || ||||||||||| Sbjct 14378 ACAGCTTGCTTCCAAAGCACCGTAATAAATAGTTTCAAATAT 14337 Score = 93.3 bits (102), Expect = 5e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 48618 GTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAA 48677 || || || || ||| | || || |||| |||||||| ||||| |||||||| | | Sbjct 13007 GTAGGCGAAGCGTGAGTGAAATATCTCTCCGATAACAAGTTATAAGTTTCAATCGCTGCG 12948 Query 48678 TCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA 48737 || ||||| ||| || |||| || || ||||| ||||||| ||| || | ||| Sbjct 12947 TCGATATCTTCAGCATGAATTCCTACAGCAACTCGCATCAACATATGTTGTGGGCGTTCT 12888 Query 48738 ACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGT 48781 |||| ||| ||||||||||| | ||| ||||||||||| || Sbjct 12887 ACAACTTTTCCGTTTATTTTCAATAAATACGATTTTTCCAAAGT 12844 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/143 (75%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 47906 TACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGT 47965 |||||||| ||| | |||||| | ||||||| ||| | ||||| || ||| ||||| Sbjct 13922 TACCTCATCAGGAGCACTATATTCGACGATTTCAGTACACAAATTACTACTTTTAATAGT 13863 Query 47966 ACCCAAATTTTGATGATT--ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGT 48023 || |||||||||||||| ||| | ||||| || || ||||| | ||| ||||| Sbjct 13862 TCCTAAATTTTGATGATTGGATTTTC--TATTACAGGCATCTTTGTACAACATGTAAGGT 13805 Query 48024 GTTCCAGTTTCTATCTGAGATTC 48046 ||||| ||||| || ||||| || Sbjct 13804 GTTCCTGTTTCAATTTGAGAGTC 13782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561543979025040