Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq63578 100 2e-16 seq52934 87.8 1e-12 seq28572 82.4 6e-11 >seq63578 Length=26733 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || || ||||||||||| ||| || ||||| ||||||||||| || | || Sbjct 11831 AGACGTAAGACCAAATGTAGGGTGGATTCCTTTTGGATATTGTAATCGCTTAACGTGCGG 11890 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||| || |||||||| || || | |||||| || || | |||| || || Sbjct 11891 CCGTCTTCCAATTGTTTACCGGCGAAAATTAATCGCTGCTGGTCGGGTGGAATACCTTCT 11950 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| ||| | | | || || | ||| || |||| ||| Sbjct 11951 TTGTCTTGAATCTTGGCTTTAACATTCTCGATTGTATCGGATGGCTCTACTTCCAACGTG 12010 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | |||||||| ||||| ||||| Sbjct 12011 ATAGTTTTACCGGTGAGCGTTTTTACGAAAATTTGCAT 12048 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||||| ||||| || |||||| ||| | || | || ||| Sbjct 11612 ACCAAGTGAAGAGTGGATTCTTTCTGAATGTTATAATCACTCAGAGTACGGCCATCTTCC 11671 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 ||||| ||||||||||| |||| ||| || || || | || | ||| || || || | Sbjct 11672 AACTGTTTACCGGCAAAGATCAATCGTTGCTGGTCTGGTGGTATGCCTTCTTTATCCTGA 11731 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| ||| | | | || |||| |||||||||| || || |||||| Sbjct 11732 ATTTTAGCTTTGACATTTTCAATGGTATCGGACGGTTCCACCTCCAAGGTTATGGTTTTT 11791 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||||| || ||||| ||||| Sbjct 11792 CCAGTGAGCGTTTTAACGAAAATTTGCAT 11820 >seq52934 Length=6696 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 ||||||| ||||||||||| |||||| ||| | | || ||||| ||||| ||||| || | Sbjct 3966 CTTTTTGGATATTGTAATCGGATAGAGTTCTACCATCTTCCAATTGCTTTCCGGCGAAGA 4025 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 ||| || || || || | || | || || || || ||| || ||||||| Sbjct 4026 TCAAACGTTGCTGGTCGGGAGGGATACCTTCTTTATCTTGAATTTTAGCTTTTACATTTT 4085 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | || || || | || || || | || |||||||| ||||| | ||||| || | Sbjct 4086 CAATAGTATCCGAAGGTTCGACTTCGAGAGTGATCGTTTTACCCGTTAGGGTTTTCACGA 4145 Query 48757 AAATCTGCATC 48767 | ||||||||| Sbjct 4146 AGATCTGCATC 4156 >seq28572 Length=14732 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||||||||| ||||| |||||| || ||||||||||| || ||| ||| | Sbjct 1614 AGTCGCAACACCAAATGCAGCGTCGACTCTTTCTGGATATTGTAATCCGAAAGAGTTCTA 1673 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| ||||| || || | || || ||||| | || | || || Sbjct 1674 CCATCTTCAAGCTGCTTTCCGGCGAAAATTAAACGTTGCTGATCGGGAGGGATTCCTTCT 1733 Query 48669 TTGTC 48673 ||||| Sbjct 1734 TTGTC 1738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380564393766678