Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq63578 100 2e-16
seq52934 87.8 1e-12
seq28572 82.4 6e-11
>seq63578
Length=26733
Score = 100 bits (110), Expect = 2e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || || ||||||||||| ||| || ||||| ||||||||||| || | ||
Sbjct 11831 AGACGTAAGACCAAATGTAGGGTGGATTCCTTTTGGATATTGTAATCGCTTAACGTGCGG 11890
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| ||||| || |||||||| || || | |||||| || || | |||| || ||
Sbjct 11891 CCGTCTTCCAATTGTTTACCGGCGAAAATTAATCGCTGCTGGTCGGGTGGAATACCTTCT 11950
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| |||||| ||| ||| | | | || || | ||| || |||| |||
Sbjct 11951 TTGTCTTGAATCTTGGCTTTAACATTCTCGATTGTATCGGATGGCTCTACTTCCAACGTG 12010
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| || || | |||||||| ||||| |||||
Sbjct 12011 ATAGTTTTACCGGTGAGCGTTTTTACGAAAATTTGCAT 12048
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || ||| ||||| ||||| || |||||| ||| | || | || |||
Sbjct 11612 ACCAAGTGAAGAGTGGATTCTTTCTGAATGTTATAATCACTCAGAGTACGGCCATCTTCC 11671
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
||||| ||||||||||| |||| ||| || || || | || | ||| || || || |
Sbjct 11672 AACTGTTTACCGGCAAAGATCAATCGTTGCTGGTCTGGTGGTATGCCTTCTTTATCCTGA 11731
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
|| || ||| ||| | | | || |||| |||||||||| || || ||||||
Sbjct 11732 ATTTTAGCTTTGACATTTTCAATGGTATCGGACGGTTCCACCTCCAAGGTTATGGTTTTT 11791
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || | ||||| || ||||| |||||
Sbjct 11792 CCAGTGAGCGTTTTAACGAAAATTTGCAT 11820
>seq52934
Length=6696
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636
||||||| ||||||||||| |||||| ||| | | || ||||| ||||| ||||| || |
Sbjct 3966 CTTTTTGGATATTGTAATCGGATAGAGTTCTACCATCTTCCAATTGCTTTCCGGCGAAGA 4025
Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696
||| || || || || | || | || || || || ||| || |||||||
Sbjct 4026 TCAAACGTTGCTGGTCGGGAGGGATACCTTCTTTATCTTGAATTTTAGCTTTTACATTTT 4085
Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756
| | || || || | || || || | || |||||||| ||||| | ||||| || |
Sbjct 4086 CAATAGTATCCGAAGGTTCGACTTCGAGAGTGATCGTTTTACCCGTTAGGGTTTTCACGA 4145
Query 48757 AAATCTGCATC 48767
| |||||||||
Sbjct 4146 AGATCTGCATC 4156
>seq28572
Length=14732
Score = 82.4 bits (90), Expect = 6e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||||||||||||| ||||| |||||| || ||||||||||| || ||| ||| |
Sbjct 1614 AGTCGCAACACCAAATGCAGCGTCGACTCTTTCTGGATATTGTAATCCGAAAGAGTTCTA 1673
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | |||||| ||||| || || | || || ||||| | || | || ||
Sbjct 1674 CCATCTTCAAGCTGCTTTCCGGCGAAAATTAAACGTTGCTGATCGGGAGGGATTCCTTCT 1733
Query 48669 TTGTC 48673
|||||
Sbjct 1734 TTGTC 1738
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380564393766678
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |