Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_019704.1 Length=44375 Score E Sequences producing significant alignments: (Bits) Value seq69273 268 3e-67 >seq69273 Length=3889 Score = 268 bits (296), Expect = 3e-67 Identities = 237/296 (80%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 2051 GTTTACCTCACAGAGGTAGGAACAGACACCGCAAAAGAGCAGATTTATAACCGTTTCACG 2110 |||||||| || || | || || || ||||| |||||||||||||||||||| ||||| Sbjct 779 GTTTACCTTACCGAAATCGGTACGGATACCGCGAAAGAGCAGATTTATAACCGCTTCACA 720 Query 2111 CTGGTGGCGCAAAGAGACGAGCCGCTGGCGGGAGCGGTTCATTTCCCGAATAACCCAGAA 2170 ||| | || || | || || ||||| | || || ||||| |||||||||||||| || Sbjct 719 CTGACGCCGGAAGGGGATGAACCGCTTCCCGGTGCCGTTCACTTCCCGAATAACCCGGAT 660 Query 2171 ATCTACGATCTAACAGAGGCCCAACAACTAACAGCTGAAGAGCAGGTGGAAAAATGGGTA 2230 || | ||||| || || || || || || || |||||||||||||| ||||||||||| Sbjct 659 ATTTTTGATCTGACCGAAGCGCAGCAGCTGACTGCTGAAGAGCAGGTCGAAAAATGGGTG 600 Query 2231 GACGGAAAGAAAAAGATCGTCTGGGACAGCAAAAAACGACGAAATGAGGCGCTCGATTGC 2290 || || | |||||| || | |||||||||||||| ||||| |||||||| ||||| ||| Sbjct 599 GATGGCAGGAAAAAAATACTGTGGGACAGCAAAAAGCGACGCAATGAGGCACTCGACTGC 540 Query 2291 TTTGTTTATGCACTGGCGGCGCTGCGTATAAGCATATCCCGCTGGCAGCTAAATCT 2346 || |||||||| |||||||||||||| || || || |||||||||||||| |||| Sbjct 539 TTCGTTTATGCGCTGGCGGCGCTGCGCATCAGTATTTCCCGCTGGCAGCTGGATCT 484 Score = 136 bits (150), Expect = 1e-27 Identities = 125/158 (79%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 12429 TTTGCAGGTGGCGGTTATACCGGTTCAGGCGGGAAATATGAACCTGCAGGTGTCGTTCAC 12488 |||||| || || | ||| || | ||||| |||||||| || || || | |||||| Sbjct 3815 TTTGCAACCGGAGGATTTACGGGAACCGGCGGCAAATATGAGCCAGCGGGGATTGTTCAC 3756 Query 12489 CGTGGTGAATTTGTTTTCACCAAAGAGGCTACCAGCCGGATCGGCGTCGGCAATCTTTAC 12548 |||||||| ||||| ||||| || ||||| ||||||||||| ||||| || ||||||||| Sbjct 3755 CGTGGTGAGTTTGTCTTCACGAAGGAGGCAACCAGCCGGATTGGCGTGGGGAATCTTTAC 3696 Query 12549 CGGATGATGAAAGGGTATGCCACGGGTGGGTATGTCGG 12586 ||| ||||| || |||||||| || || |||||||| Sbjct 3695 CGGCTGATGCGCGGCTATGCCACCGGCGGTTATGTCGG 3658 Score = 129 bits (142), Expect = 2e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 2665 TGGGACCTGACGGGAAAACATCCCTTCGGGAATACGCAGGATATCATGGCGGTGGAGGCG 2724 |||| || ||||| | ||||| || || ||||| || || ||||| |||||||| ||| Sbjct 3597 TGGGGCCGGACGGCATGACATCGCTGCGCGAATATGCCGGTTATCACGGCGGTGGCAGCG 3538 Query 2725 GGTTTGGTGGGCAGCTGCGAGGCTGGAATCCGCCGAGTGAAAGTGCAGATGCCGCACTCC 2784 | ||||| |||||| |||| ||||| || ||||||||||||| ||||| || || Sbjct 3537 GATTTGGAGGGCAGTTGCGGTCGTGGAACCCACCGAGTGAAAGTGTGGATGCAGCCCTGT 3478 Query 2785 TACCCAACTATTCTCGCGGAAATGCCCGCGCTGACGATCTG 2825 | ||||||| | | || || ||||||||||| ||||||||| Sbjct 3477 TGCCCAACTTTACCCGTGGCAATGCCCGCGCAGACGATCTG 3437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141742965184884