Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_019711.1 Length=47288 Score E Sequences producing significant alignments: (Bits) Value seq69273 560 3e-155 seq67353 343 4e-90 >seq69273 Length=3889 Score = 560 bits (620), Expect = 3e-155 Identities = 310/310 (100%), Gaps = 0/310 (0%) Strand=Plus/Minus Query 2051 GTTTACCTTACCGAAATCGGTACGGATACCGCGAAAGAGCAGATTTATAACCGCTTCACA 2110 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 GTTTACCTTACCGAAATCGGTACGGATACCGCGAAAGAGCAGATTTATAACCGCTTCACA 720 Query 2111 CTGACGCCGGAAGGGGATGAACCGCTTCCCGGTGCCGTTCACTTCCCGAATAACCCGGAT 2170 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 CTGACGCCGGAAGGGGATGAACCGCTTCCCGGTGCCGTTCACTTCCCGAATAACCCGGAT 660 Query 2171 ATTTTTGATCTGACCGAAGCGCAGCAGCTGACTGCTGAAGAGCAGGTCGAAAAATGGGTG 2230 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 ATTTTTGATCTGACCGAAGCGCAGCAGCTGACTGCTGAAGAGCAGGTCGAAAAATGGGTG 600 Query 2231 GATGGCAGGaaaaaaaTACTGTGGGACAGCAAAAAGCGACGCAATGAGGCACTCGACTGC 2290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 GATGGCAGGAAAAAAATACTGTGGGACAGCAAAAAGCGACGCAATGAGGCACTCGACTGC 540 Query 2291 TTCGTTTATGCGCTGGCGGCGCTGCGCATCAGTATTTCCCGCTGGCAGCTGGATCTCAGT 2350 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 TTCGTTTATGCGCTGGCGGCGCTGCGCATCAGTATTTCCCGCTGGCAGCTGGATCTCAGT 480 Query 2351 GCGCTGCTGG 2360 |||||||||| Sbjct 479 GCGCTGCTGG 470 Score = 482 bits (534), Expect = 7e-132 Identities = 269/270 (99%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 12474 TTGGCGGGGCTGTTGGTGGCGGCGCATCCGCGTCAGGCGGTACAGCCATTCAGGCCGCTG 12533 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3889 TTAGCGGGGCTGTTGGTGGCGGCGCATCCGCGTCAGGCGGTACAGCCATTCAGGCCGCTG 3830 Query 12534 CGGCGAAATTCCATTTTGCAACCGGAGGATTTACGGGAACCGGCGGCAAATATGAGCCAG 12593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3829 CGGCGAAATTCCATTTTGCAACCGGAGGATTTACGGGAACCGGCGGCAAATATGAGCCAG 3770 Query 12594 CGGGGATTGTTCACCGTGGTGAGTTTGTCTTCACGAAGGAGGCAACCAGCCGGATTGGCG 12653 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3769 CGGGGATTGTTCACCGTGGTGAGTTTGTCTTCACGAAGGAGGCAACCAGCCGGATTGGCG 3710 Query 12654 TGGGGAATCTTTACCGGCTGATGCGCGGCTATGCCACCGGCGGTTATGTCGGTACACCGG 12713 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3709 TGGGGAATCTTTACCGGCTGATGCGCGGCTATGCCACCGGCGGTTATGTCGGTACACCGG 3650 Query 12714 GCAGCATGGCAGACAGCCGGTCGCAGGCGT 12743 |||||||||||||||||||||||||||||| Sbjct 3649 GCAGCATGGCAGACAGCCGGTCGCAGGCGT 3620 Score = 300 bits (332), Expect = 5e-77 Identities = 166/166 (100%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 2669 CCTTCTGGGGCCGGACGGCATGACATCGCTGCGCGAATATGCCGGTTATCACGGCGGTGG 2728 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3602 CCTTCTGGGGCCGGACGGCATGACATCGCTGCGCGAATATGCCGGTTATCACGGCGGTGG 3543 Query 2729 CAGCGGATTTGGAGGGCAGTTGCGGTCGTGGAACCCACCGAGTGAAAGTGTGGATGCAGC 2788 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3542 CAGCGGATTTGGAGGGCAGTTGCGGTCGTGGAACCCACCGAGTGAAAGTGTGGATGCAGC 3483 Query 2789 CCTGTTGCCCAACTTTACCCGTGGCAATGCCCGCGCAGACGATCTG 2834 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3482 CCTGTTGCCCAACTTTACCCGTGGCAATGCCCGCGCAGACGATCTG 3437 >seq67353 Length=817 Score = 343 bits (380), Expect = 4e-90 Identities = 190/190 (100%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 12244 AGGCCTGAAGTCCGGCTGGAGTGAGTGGGAAGAGAGCGCCACGGACAGTATGTCGCAGGT 12303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 503 AGGCCTGAAGTCCGGCTGGAGTGAGTGGGAAGAGAGCGCCACGGACAGTATGTCGCAGGT 444 Query 12304 AAAAAGTGCAGCCACGCAGACCTTTGATGGTATTGCACAGAATATGGCGGCGATGCTGAC 12363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 443 AAAAAGTGCAGCCACGCAGACCTTTGATGGTATTGCACAGAATATGGCGGCGATGCTGAC 384 Query 12364 CGGCAGTGAGCAGAACTGGCGCAGCTTCACCCGTTCCGTGCTGTCCATGATGACAGAAAT 12423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 383 CGGCAGTGAGCAGAACTGGCGCAGCTTCACCCGTTCCGTGCTGTCCATGATGACAGAAAT 324 Query 12424 TCTGCTTAAG 12433 |||||||||| Sbjct 323 TCTGCTTAAG 314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151055666937000