Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27]
80,386 sequences; 237,582,517 total letters
Query= NC_019717.1
Length=45366
Score E
Sequences producing significant alignments: (Bits) Value
seq69273 279 1e-70
seq9614 165 2e-36
>seq69273
Length=3889
Score = 279 bits (308), Expect = 1e-70
Identities = 240/297 (81%), Gaps = 0/297 (0%)
Strand=Plus/Minus
Query 2050 CGTTTACCTCACTGAGGTAGGAACAGACACCGCAAAAGAGCAGATTTATAACCGTTTCAC 2109
||||||||| || || | || || || ||||| |||||||||||||||||||| |||||
Sbjct 780 CGTTTACCTTACCGAAATCGGTACGGATACCGCGAAAGAGCAGATTTATAACCGCTTCAC 721
Query 2110 GCTGGTGGCGCAAAGAGACGAGCCGCTGGCGGGAGCGGTTCATTTCCCGAATAACCCAGA 2169
||| | || || | || || ||||| | || || ||||| |||||||||||||| ||
Sbjct 720 ACTGACGCCGGAAGGGGATGAACCGCTTCCCGGTGCCGTTCACTTCCCGAATAACCCGGA 661
Query 2170 AATCTACGATCTAACCGAGGCCCAACAACTAACTGCTGAAGAGCAGGTGGAAAAATGGGT 2229
|| | ||||| ||||| || || || || ||||||||||||||||| |||||||||||
Sbjct 660 TATTTTTGATCTGACCGAAGCGCAGCAGCTGACTGCTGAAGAGCAGGTCGAAAAATGGGT 601
Query 2230 AGACGGAAAGAAAAAGATCGTCTGGGACAGCAAAAAACGACGAAATGAGGCGCTCGATTG 2289
|| || | |||||| || | |||||||||||||| ||||| |||||||| ||||| ||
Sbjct 600 GGATGGCAGGAAAAAAATACTGTGGGACAGCAAAAAGCGACGCAATGAGGCACTCGACTG 541
Query 2290 CTTTGTTTATGCACTGGCGGCGCTTCGTATCAGCATATCCCGCTGGCAGCTAAATCT 2346
||| |||||||| ||||||||||| || ||||| || |||||||||||||| ||||
Sbjct 540 CTTCGTTTATGCGCTGGCGGCGCTGCGCATCAGTATTTCCCGCTGGCAGCTGGATCT 484
Score = 150 bits (166), Expect = 5e-32
Identities = 128/158 (81%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 12440 TTTGCAGGTGGCGGTTATACCGGTTCAGGCGGGAAATATGAGCCAGCAGGTGTCGTTCAC 12499
|||||| || || | ||| || | ||||| |||||||||||||| || | ||||||
Sbjct 3815 TTTGCAACCGGAGGATTTACGGGAACCGGCGGCAAATATGAGCCAGCGGGGATTGTTCAC 3756
Query 12500 CGTGGTGAGTTTGTTTTCACCAAAGAGGCTACCAGCCGGATCGGCGTCGGCAATCTTTAC 12559
|||||||||||||| ||||| || ||||| ||||||||||| ||||| || |||||||||
Sbjct 3755 CGTGGTGAGTTTGTCTTCACGAAGGAGGCAACCAGCCGGATTGGCGTGGGGAATCTTTAC 3696
Query 12560 CGGATGATGAAAGGCTATGCAACGGGAGGGTATGTCGG 12597
||| ||||| |||||||| || || || ||||||||
Sbjct 3695 CGGCTGATGCGCGGCTATGCCACCGGCGGTTATGTCGG 3658
Score = 132 bits (146), Expect = 1e-26
Identities = 126/161 (78%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 2665 TGGGACCTGACGGGAAAACATCCCTTCGGGAATACGCGGGATATCATGGTGGTGGTGGCG 2724
|||| || ||||| | ||||| || || ||||| || || ||||| || ||||| |||
Sbjct 3597 TGGGGCCGGACGGCATGACATCGCTGCGCGAATATGCCGGTTATCACGGCGGTGGCAGCG 3538
Query 2725 GGTTTGGTGGGCAGCTGCGGGGCTGGAATCCGCCGAGTGAAAGTGCAGATGCCGCACTCC 2784
| ||||| |||||| ||||| ||||| || ||||||||||||| ||||| || ||
Sbjct 3537 GATTTGGAGGGCAGTTGCGGTCGTGGAACCCACCGAGTGAAAGTGTGGATGCAGCCCTGT 3478
Query 2785 TTCCCAACTATTCTCGTGGAAATGCCCGCGCTGACGATCTG 2825
| ||||||| | | ||||| ||||||||||| |||||||||
Sbjct 3477 TGCCCAACTTTACCCGTGGCAATGCCCGCGCAGACGATCTG 3437
>seq9614
Length=652
Score = 165 bits (182), Expect = 2e-36
Identities = 198/269 (74%), Gaps = 0/269 (0%)
Strand=Plus/Minus
Query 40635 CGCAATATCTTCGTCGTCGGCGATCTGCATGGGTGCTACACGCTGCTGATGAATGAGCTC 40694
|| ||||| | || || ||||||||||| || ||||||||| |||||||| | ||
Sbjct 275 CGAAATATTTGGGTAGTTGGCGATCTGCACGGATGCTACACGAACCTGATGAACAAACTG 216
Query 40695 GAAAAGGTTTCGTTCGACCCTGCGCGTGATTTGCTGATCTCGGTTGGTGACCTTGTTGAC 40754
|| | | || |||||| || |||| |||||||| || || | |||||
Sbjct 215 GATACGATTGGATTCGACAACAAAAAAGACCTGCTTATCTCGGTGGGCGATTTGGTTGAT 156
Query 40755 CGCGGCGCGGAAAACGTCGAGTGCCTGGATCTGATTACTATGCCGTGGTTCAGGGCAGTG 40814
|| || || || ||||| || |||||||| | || || | || |||||||| || ||
Sbjct 155 CGTGGTGCAGAGAACGTTGAATGCCTGGAATTAATCACATTCCCCTGGTTCAGAGCTGTA 96
Query 40815 CGCGGTAACCATGAGCAGATGATGGTTGATGGGCTTTCAGAGCATGGAAACGTCAATCAC 40874
|| || ||||||||||| |||||| ||||||| | ||||||| ||||||||| ||||||
Sbjct 95 CGTGGAAACCATGAGCAAATGATGATTGATGGCTTATCAGAGCGTGGAAACGTTAATCAC 36
Query 40875 TGGCTGGTAAACGGTGGCGGTTGGTTCTT 40903
|||||| | || || || || ||||||||
Sbjct 35 TGGCTGCTTAATGGCGGTGGCTGGTTCTT 7
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 144911138008896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |