Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_019717.1 Length=45366 Score E Sequences producing significant alignments: (Bits) Value seq69273 279 1e-70 seq9614 165 2e-36 >seq69273 Length=3889 Score = 279 bits (308), Expect = 1e-70 Identities = 240/297 (81%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 2050 CGTTTACCTCACTGAGGTAGGAACAGACACCGCAAAAGAGCAGATTTATAACCGTTTCAC 2109 ||||||||| || || | || || || ||||| |||||||||||||||||||| ||||| Sbjct 780 CGTTTACCTTACCGAAATCGGTACGGATACCGCGAAAGAGCAGATTTATAACCGCTTCAC 721 Query 2110 GCTGGTGGCGCAAAGAGACGAGCCGCTGGCGGGAGCGGTTCATTTCCCGAATAACCCAGA 2169 ||| | || || | || || ||||| | || || ||||| |||||||||||||| || Sbjct 720 ACTGACGCCGGAAGGGGATGAACCGCTTCCCGGTGCCGTTCACTTCCCGAATAACCCGGA 661 Query 2170 AATCTACGATCTAACCGAGGCCCAACAACTAACTGCTGAAGAGCAGGTGGAAAAATGGGT 2229 || | ||||| ||||| || || || || ||||||||||||||||| ||||||||||| Sbjct 660 TATTTTTGATCTGACCGAAGCGCAGCAGCTGACTGCTGAAGAGCAGGTCGAAAAATGGGT 601 Query 2230 AGACGGAAAGAAAAAGATCGTCTGGGACAGCAAAAAACGACGAAATGAGGCGCTCGATTG 2289 || || | |||||| || | |||||||||||||| ||||| |||||||| ||||| || Sbjct 600 GGATGGCAGGAAAAAAATACTGTGGGACAGCAAAAAGCGACGCAATGAGGCACTCGACTG 541 Query 2290 CTTTGTTTATGCACTGGCGGCGCTTCGTATCAGCATATCCCGCTGGCAGCTAAATCT 2346 ||| |||||||| ||||||||||| || ||||| || |||||||||||||| |||| Sbjct 540 CTTCGTTTATGCGCTGGCGGCGCTGCGCATCAGTATTTCCCGCTGGCAGCTGGATCT 484 Score = 150 bits (166), Expect = 5e-32 Identities = 128/158 (81%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 12440 TTTGCAGGTGGCGGTTATACCGGTTCAGGCGGGAAATATGAGCCAGCAGGTGTCGTTCAC 12499 |||||| || || | ||| || | ||||| |||||||||||||| || | |||||| Sbjct 3815 TTTGCAACCGGAGGATTTACGGGAACCGGCGGCAAATATGAGCCAGCGGGGATTGTTCAC 3756 Query 12500 CGTGGTGAGTTTGTTTTCACCAAAGAGGCTACCAGCCGGATCGGCGTCGGCAATCTTTAC 12559 |||||||||||||| ||||| || ||||| ||||||||||| ||||| || ||||||||| Sbjct 3755 CGTGGTGAGTTTGTCTTCACGAAGGAGGCAACCAGCCGGATTGGCGTGGGGAATCTTTAC 3696 Query 12560 CGGATGATGAAAGGCTATGCAACGGGAGGGTATGTCGG 12597 ||| ||||| |||||||| || || || |||||||| Sbjct 3695 CGGCTGATGCGCGGCTATGCCACCGGCGGTTATGTCGG 3658 Score = 132 bits (146), Expect = 1e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 2665 TGGGACCTGACGGGAAAACATCCCTTCGGGAATACGCGGGATATCATGGTGGTGGTGGCG 2724 |||| || ||||| | ||||| || || ||||| || || ||||| || ||||| ||| Sbjct 3597 TGGGGCCGGACGGCATGACATCGCTGCGCGAATATGCCGGTTATCACGGCGGTGGCAGCG 3538 Query 2725 GGTTTGGTGGGCAGCTGCGGGGCTGGAATCCGCCGAGTGAAAGTGCAGATGCCGCACTCC 2784 | ||||| |||||| ||||| ||||| || ||||||||||||| ||||| || || Sbjct 3537 GATTTGGAGGGCAGTTGCGGTCGTGGAACCCACCGAGTGAAAGTGTGGATGCAGCCCTGT 3478 Query 2785 TTCCCAACTATTCTCGTGGAAATGCCCGCGCTGACGATCTG 2825 | ||||||| | | ||||| ||||||||||| ||||||||| Sbjct 3477 TGCCCAACTTTACCCGTGGCAATGCCCGCGCAGACGATCTG 3437 >seq9614 Length=652 Score = 165 bits (182), Expect = 2e-36 Identities = 198/269 (74%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 40635 CGCAATATCTTCGTCGTCGGCGATCTGCATGGGTGCTACACGCTGCTGATGAATGAGCTC 40694 || ||||| | || || ||||||||||| || ||||||||| |||||||| | || Sbjct 275 CGAAATATTTGGGTAGTTGGCGATCTGCACGGATGCTACACGAACCTGATGAACAAACTG 216 Query 40695 GAAAAGGTTTCGTTCGACCCTGCGCGTGATTTGCTGATCTCGGTTGGTGACCTTGTTGAC 40754 || | | || |||||| || |||| |||||||| || || | ||||| Sbjct 215 GATACGATTGGATTCGACAACAAAAAAGACCTGCTTATCTCGGTGGGCGATTTGGTTGAT 156 Query 40755 CGCGGCGCGGAAAACGTCGAGTGCCTGGATCTGATTACTATGCCGTGGTTCAGGGCAGTG 40814 || || || || ||||| || |||||||| | || || | || |||||||| || || Sbjct 155 CGTGGTGCAGAGAACGTTGAATGCCTGGAATTAATCACATTCCCCTGGTTCAGAGCTGTA 96 Query 40815 CGCGGTAACCATGAGCAGATGATGGTTGATGGGCTTTCAGAGCATGGAAACGTCAATCAC 40874 || || ||||||||||| |||||| ||||||| | ||||||| ||||||||| |||||| Sbjct 95 CGTGGAAACCATGAGCAAATGATGATTGATGGCTTATCAGAGCGTGGAAACGTTAATCAC 36 Query 40875 TGGCTGGTAAACGGTGGCGGTTGGTTCTT 40903 |||||| | || || || || |||||||| Sbjct 35 TGGCTGCTTAATGGCGGTGGCTGGTTCTT 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144911138008896