Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trionymus_20perrisii_20[genbank_20GCA_5F900050545.1_202016-03-27] 80,386 sequences; 237,582,517 total letters Query= NC_019720.1 Length=44120 Score E Sequences producing significant alignments: (Bits) Value seq9614 1088 0.0 seq69273 120 9e-23 >seq9614 Length=652 Score = 1088 bits (1206), Expect = 0.0 Identities = 630/648 (97%), Gaps = 0/648 (0%) Strand=Plus/Minus Query 39240 ATCGCGTCGAACTGATTAACCGCATAGGGCAGGAAGCAGTAGACGAAATCGAATCAAACC 39299 |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 652 ATCGCGTCGAACTGATTAGCCGCATCGGGCAGGAAGCAGTAGACGAAATCGAATCAAACC 593 Query 39300 ATAGCCGCCATCGCTGGACTATCGAAGAGTGCAAGGCGATCAAGGCAGAGTACCAACAGA 39359 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 592 ATAACCGCCATCGCTGGACTATCGAAGAGTGCAAGGCGATCAAGGCAGAGTACCAACAGA 533 Query 39360 AACTCAAAGACCTGCGAAATAGCAGAAGTGAGGCCGCATGACGTTCTCAGTAAAAACCAT 39419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 532 AACTCAAAGACCTGCGAAATAGCAGAAGTGAGGCCGCATGACGTTCTCAGTAAAAACCAT 473 Query 39420 TCCAGACATGCTCGTTGAAGCATACGGAAACCAGACAGAAGTAGCACGCAGGCTGAAATG 39479 ||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||| Sbjct 472 TCCAGACATGCTCGTTGAAACATACGGAAATCAGACAGAAGTAGCACGCAGACTGAAATG 413 Query 39480 TAGTCGCGGCACGGTCAGAAAATACGTTGATGATAAAGACGGGAAAATGCACGCCATCGT 39539 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 412 TAGTCGCGGTACGGTCAGAAAATACGTTGATGATAAAGACGGGAAAATGCACGCCATCGT 353 Query 39540 CAACGACGTTCTTATGGTTCATCGCGGATGGAGTGAAAGAGATGCGCTATTACGAAAGAA 39599 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 352 CAACGACGTTCTCATGGTTCATCGCGGATGGAGTGAAAGAGATGCGCTATTACGAAAAAA 293 Query 39600 TTGATGGCAGCAAATACCGAAATATTTGGGTAGTTGGCGATCTGCACGGATGCTACACGA 39659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 292 TTGATGGCAGCAAATACCGAAATATTTGGGTAGTTGGCGATCTGCACGGATGCTACACGA 233 Query 39660 ACCTGATGAAAAAACTGGAGACGATAGGATTCGACACCAAAAAAGACCTGCTTATCTCGG 39719 |||||||||| |||||||| ||||| |||||||||| ||||||||||||||||||||||| Sbjct 232 ACCTGATGAACAAACTGGATACGATTGGATTCGACAACAAAAAAGACCTGCTTATCTCGG 173 Query 39720 TTGGCGATTTGGTTGATCGCGGTACAGAGAACGTCGAATGCCTGGAATTAATCACATTCC 39779 | ||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||| Sbjct 172 TGGGCGATTTGGTTGATCGTGGTGCAGAGAACGTTGAATGCCTGGAATTAATCACATTCC 113 Query 39780 CCTGGTTCAGAGCTGTACGTGGAAACCATGAGCAAATGATGATTGATGGCTTATCAGAGC 39839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 112 CCTGGTTCAGAGCTGTACGTGGAAACCATGAGCAAATGATGATTGATGGCTTATCAGAGC 53 Query 39840 GTGGAAACGTCAATCACTGGCTGCTTAATGGCGGTGGCTGGTTCTTTA 39887 |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 52 GTGGAAACGTTAATCACTGGCTGCTTAATGGCGGTGGCTGGTTCTTTA 5 >seq69273 Length=3889 Score = 120 bits (132), Expect = 9e-23 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 12346 GGCGGTTTTACCGGGCACGGCGGCAAGTACGAGCCAGCCGGTATCGTTCACCGCGGGGAA 12405 || || ||||| || ||||||||| || |||||||| || || |||||||| || || Sbjct 3806 GGAGGATTTACGGGAACCGGCGGCAAATATGAGCCAGCGGGGATTGTTCACCGTGGTGAG 3747 Query 12406 TTCGTCTTCACCAAAGAATCAACCAGCCGCATCGGCGTGGCTAATCTCTATCGCCTGATG 12465 || |||||||| || || |||||||||| || ||||||| ||||| || || |||||| Sbjct 3746 TTTGTCTTCACGAAGGAGGCAACCAGCCGGATTGGCGTGGGGAATCTTTACCGGCTGATG 3687 Query 12466 CGCGGGTATGCCTCGGGTGGTCTGGTCGG 12494 ||||| |||||| | || ||| ||||| Sbjct 3686 CGCGGCTATGCCACCGGCGGTTATGTCGG 3658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140927744125224